Detail information of GWHGAAEX001078/evm.TU.scaffold_104.104_evm.TU.scaffold_104.103
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256421753|ref|YP_003122406.1| | 3.00E-89 | uracil-DNA glycosylase [Chitinophaga pinensis DSM 2588] |
| KOG | KOG2994 | 9.00E-137 | Uracil DNA glycosylase |
| nr | gi|720069046|ref|XP_010277313.1| | 2.97E-164 | PREDICTED: uracil-DNA glycosylase isoform X1 [Nelumbo nucifera] |
| trEMBL | tr|M0SEH4|M0SEH4_MUSAM | 1.00E-153 | Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_03166} |
| TAIR | AT3G18630 | 9.00E-137 | uracil dna glycosylase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 2666998 | 2745323 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001078
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03167.18 | UDG | 157 | 313 | 5.60E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03648 | UNG, UDG | Base excision repair | map03410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006284 | Biological Process | base-excision repair |
| GO:0006281 | Biological Process | DNA repair |
| GO:0004844 | Molecular Function | uracil DNA N-glycosylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.350 |
| SRR2545915 | Juvenile tuber | 6.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.110 |
| SRR5643514 | five period of Gastrodia elata | 3.850 | |
| SRR5643515 | five period of Gastrodia elata | 3.830 | |
| SRR5643524 | five period of Gastrodia elata | 4.850 | |
| SRR5643525 | five period of Gastrodia elata | 1.570 | |
| SRR5643528 | five period of Gastrodia elata | 1.990 | |
| SRR5643658 | five period of Gastrodia elata | 1.190 | |
| SRR5643659 | five period of Gastrodia elata | 2.040 | |
| SRR5643660 | five period of Gastrodia elata | 2.680 | |
| SRR5643661 | five period of Gastrodia elata | 3.200 | |
| SRR5643662 | five period of Gastrodia elata | 1.390 | |
| SRR5643663 | five period of Gastrodia elata | 1.180 | |
| SRR5643664 | five period of Gastrodia elata | 1.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.40 |
| Juven | Juvenile tuber | 1.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.45 | |
| Mother_Juven | Mother tuber of Juvenile | 2.67 |