Detail information of GWHGAAEX001079/evm.TU.scaffold_104.105
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|328543588|ref|YP_004303697.1| | 8.00E-32 | 2OG-Fe(II) oxygenase [Polymorphum gilvum SL003B-26A1] |
| KOG | KOG0143 | 1.00E-100 | Iron/ascorbate family oxidoreductases |
| nr | gi|695059940|ref|XP_009418345.1| | 3.21E-155 | PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O49561|G2OX8_ARATH | 5.00E-125 | Gibberellin 2-beta-dioxygenase 8 |
| trEMBL | tr|M0U285|M0U285_MUSAM | 9.00E-156 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21260_001} |
| TAIR | AT4G21200 | 1.00E-100 | gibberellin 2-oxidase 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 2755884 | 2757451 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001079
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 43 | 134 | 3.10E-19 |
| PF03171.19 | 2OG-FeII_Oxy | 196 | 291 | 2.10E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04125 | E1.14.11.13 | Biosynthesis of secondary metabolites | map01110 |
| Diterpenoid biosynthesis | map00904 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.710 |
| SRR5643514 | five period of Gastrodia elata | 3.160 | |
| SRR5643515 | five period of Gastrodia elata | 6.050 | |
| SRR5643524 | five period of Gastrodia elata | 4.980 | |
| SRR5643525 | five period of Gastrodia elata | 0.460 | |
| SRR5643528 | five period of Gastrodia elata | 1.140 | |
| SRR5643658 | five period of Gastrodia elata | 0.230 | |
| SRR5643659 | five period of Gastrodia elata | 0.880 | |
| SRR5643660 | five period of Gastrodia elata | 1.060 | |
| SRR5643661 | five period of Gastrodia elata | 0.490 | |
| SRR5643662 | five period of Gastrodia elata | 0.790 | |
| SRR5643663 | five period of Gastrodia elata | 0.320 | |
| SRR5643664 | five period of Gastrodia elata | 1.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.13 |
| Juven | Juvenile tuber | 2.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.45 | |
| Mother_Juven | Mother tuber of Juvenile | 2.45 |