Detail information of GWHGAAEX001086/evm.TU.scaffold_104.114
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|289597183|ref|YP_003483879.1| | 5.00E-45 | 50S ribosomal protein L14P [Aciduliprofundum boonei T469] |
| KOG | KOG0901 | 3.00E-96 | 60S ribosomal protein L14/L17/L23 |
| nr | gi|115449557|ref|NP_001048495.1| | 2.88E-95 | Os02g0814700 [Oryza sativa Japonica Group] |
| Swissprot | tr|P49690|RL23_ARATH | 1.00E-96 | 60S ribosomal protein L23 |
| trEMBL | tr|M0RYV8|M0RYV8_MUSAM | 1.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P10990_001} |
| TAIR | AT3G04400 | 3.00E-96 | Ribosomal protein L14p/L23e family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 3043245 | 3048050 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001086
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00238.18 | Ribosomal_L14 | 22 | 140 | 2.30E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02894 | RP-L23e, RPL23 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 224.260 |
| SRR2545915 | Juvenile tuber | 289.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 537.540 |
| SRR5643514 | five period of Gastrodia elata | 651.700 | |
| SRR5643515 | five period of Gastrodia elata | 576.350 | |
| SRR5643524 | five period of Gastrodia elata | 643.020 | |
| SRR5643525 | five period of Gastrodia elata | 551.350 | |
| SRR5643528 | five period of Gastrodia elata | 658.980 | |
| SRR5643658 | five period of Gastrodia elata | 454.050 | |
| SRR5643659 | five period of Gastrodia elata | 540.620 | |
| SRR5643660 | five period of Gastrodia elata | 514.600 | |
| SRR5643661 | five period of Gastrodia elata | 590.140 | |
| SRR5643662 | five period of Gastrodia elata | 491.030 | |
| SRR5643663 | five period of Gastrodia elata | 481.850 | |
| SRR5643664 | five period of Gastrodia elata | 455.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 407.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 240.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 511.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 341.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 421.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 319.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 424.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 433.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 665.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 620.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 649.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 649.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 703.13 |
| Juven | Juvenile tuber | 599.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 432.65 | |
| Mother_Juven | Mother tuber of Juvenile | 446.21 |