Gene detail

Detail information of GWHGAAEX001087/evm.TU.scaffold_104.115

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|188577994\|ref\|YP_001914923.1\|	1.00E-10	nuclear protein SET [Xanthomonas oryzae pv. oryzae PXO99A]
KOG	KOG1082	7.00E-137	Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
nr	gi\|743836250\|ref\|XP_010936035.1\|	0	PREDICTED: histone-lysine N-methyltransferase SUVR2 [Elaeis guineensis]
Swissprot	tr\|Q8W595\|SUVR4_ARATH	1.00E-150	Histone-lysine N-methyltransferase SUVR4
trEMBL	tr\|M0S1J2\|M0S1J2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P20340_001}
TAIR	AT5G43990	7.00E-137	SET-domain containing protein lysine methyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	3057098	3097109	-

Transcript Sequence
>GWHTAAEX001087 TAGCACTACTGAAATGACAATGGAGGGAAACATCAAACCCTAGGGTGAGAGAACGAAACGATGTTACATCAATGAGCCCTAAAACTCTTAAGCCCTCAATCACAGTTTCTCCGCTATCAAAACCAAAGAAAACAAAATATTTATTGAGCCAATGTAGGTTCATAGGAGGAGCTTTAAATGCGACTTTTGTAAATTTCAAAATTTTCTGAAATTCTAGTTAAGGATGGCCCCTTCGGCGCAGTTACAAAGAGCACAAGCAGCTATTAAGGCCATGAAGCTCATTGGTTTTGATCAAACCAAGGCAAAGAAAGTCCTGAAGAAGTTGCTTAAGGTTTATGAGAACAACTGGGAGTATATTGAAGCAGAAAACTACAGGCTGCTCGCTGACTCAATACTCGATGACCAGGAATCAATGGACTACCCTGAGGCGAATGAAATAGATGCAACTGCAAGCGGGTCTCCAGAATTATCCAATAAGAGGTTAAGGTGCAAGCAAGGCGATTCTGGACACTTGCCATCGCCTATTGAAGCTGTTATTTCTGGTGAAACTTCACTCAAGAAACCAAAACTTATTTGTTCATCTGACGGTCATCTTTCAAATTCTAGAGGTAAAATGATTAAGCAAGTGCCCGCTCAAATCTCACATGAAGGAGAAGGAACGTCTTTATTGCCTCATTCTTCAATTAAAAATGGATCAAATGATGAGAGAATGTCTCAACATTCTCATAACTCTATTAATGTACCCTGTCTTGAAAAAAGCAAGCCAGTCTCACTTTTGATGCATGATAAGGATAAGCATCAACTGACCAGCATGTCAGGAAATTTAGAATGCTACAAAAATCCAAAAATTGAACATGATGCCGAAATGCTTGGACATACTCTTGCTGTCGGTTTTTCTTCTATTTCAGACATGCCTGATGAGATGGCTTGTAACTCGTATAATTATGATGTGCCTATTGCATTATTGCCATCTAATGTAATTCCTTTTGGAACTAAAGACAATCATGGTGAAGCATGGAAAGGTGATTTTCTTTGTGACAAAGCTTCAAATGGTTTAACTGGTGCAAACAGACAAGATGCACCAATGAATGAAAGAGAAGTAGAATGCTTTAAAGTTTCAACACCAGAGATGAGCATGCCCAAGCTTTCAAATGTATTCATGAATACTGACGTAGCTTCATCAAACATGGGCGAGGTAAAACTTACATTGTCCTATAACTCTGATTGTCCAGATTTTAAAACTCCAAGCATAGAATCCGTCTTTAAAATGGTTGAGGATAGGTGTTTAAAATCCTATAAAATTCTTCAACCAGATTTTTCGCTTATGAATTTAATGAAAGAGATATGCCAGTGTGCTGTTGATTTGGCAACGGAGTCTAGTAAAGCTGATCAAGAAAATACTAGAACGATGATTCCCTTGTTTGAACCTTTGAAAAGAATTCATTCTCCTAGTCTTGGTCATAGAATGATCAGAAGGTCTTCTAGTGCTTCATTAGATTTGGATTCATTAGAAATTTCGAGGCAAAACATAAATGGTCTTAAATCAAGCCGAAATGCGGATGTTGAGGTTAGTGACAAGCTGGAAAATAGCGCTCCAGAAGCCTCAGGTCATGATGCTTCACAAAATTTGGCCATAGTCCTACATCAAGAGCATGCTGTTAGTGCTCTTCACCCACCTCATGATGAGAATGACATAGCAAAAGGCGAAGAAAAAGTGCGAATTTCACTTATTAATGAAATCAACAATGAAAAGTTTCCCTCTTATTTTCATTATATTCCGCGGAATGCTGTTTATCAGAATGCACATGTTAATTTTTCCCTTGCTCGAATTGGTGACGAAGATTGCTGTTTGAACTGTTTTGGTGATTGCTTAAGTTCACCTATCCCTTGTGCCTGCACTCGAGAAACAGGTGGCGAATTTGTATACACATTGGATGGTTTACTCAAAAAGGAATTTCTGAACGAGTGCATTTCTATGAATCGTTATCCTGATAAACATCATCATATTTATTGCAAAGATTGCCCTATAGAAAAATCCAAAAATGAGCATATGCCTGATTCTTGTAAAGGACATCTTGTTAGGAAATTTATCAAAGAATGCTGGAGCAAGTGCGGATGCAACAAACAATGTGGTAATCGTGTTGTTCAGCGTGGCATATCACGCAATCTGCAGGTGTTTTTTTCAGCTGATGTGAAGGGATGGGGCCTTCGAACTCTTGAAGAATTGCCCAGAGGGGCATTCATCTGTGAATATGTAGGAGAGATCTTAACCAACATAGAGTTGTATGATCGTACTATTCAAAAAACTGGTGCTGCAAAGCACACTTACCCTGTGCTGTTGGATGCGGATTGGGGTTCAGAAGCAGGATTGAGGGATGAAGAAGCTCTTTGTTTGGATGCCACTTTCTATGGAAATGTTGGGAGATTTGTTAATCATAGATGCTTTGATGCTAATTTAGTTGAGGTTCCTGTTGAGTGGGAGACTCCTGATCATCATTATTATCATCTTGCTTTTTTTACTACAAGGAAAGTAGAACCTTTGGAGGAGCTTACATGGGATTATGGGATTGATTTTGATGATCGTTCACATCCAATTAAGGCTTTTAAATGTCTCTGTGGAAGCAGATTCTGCAGGGATAAAGGCCGAACGAAGACTAGATCGCGAGCATCAGGCTTGAGGTGAACGGCGGACAGGTTTCAGAGCATTTAAAGTAGAGCCCAAAACATGCGTTATCTTTTGTATTCCGGGCATCGTGGACACTACTGCTCGCAATTTTGGTAAGTACATCAGAACTTCTGTTTTTTGGTTTTTTTGTTTTCTGTTTTTTTGTGGTATAGCTGGTGTTTATGAAGGAATTAGATACTTTGAAATTTTGGTAGAGATGGAGATTATGAATACCAAATACTTGATTTTTGGCTCGAATGTTGGGGCGCAGTTGATCTTTAGTAGAAGAAATTTTACGGACAAAGCTGGGCATATAATCTCAGTTTGTTGATGATGTTCCGTAGGAAAAAAAAATGCATAATTAAGTGTATATGACTTCGTGCTGAAGTTTAAGAATATATTATAATATATAATATGCTAATATTCATAATATATATGGTATTGGTTACAAATTTATGCATACTTTGTAATGTACATGCATGGAATTTTTTTCCTGTTCTATGCCTGTTTTGATTCCTTTTCTTAATGGCTTGTGTTTCTTAGTTTTGCTGTGTTTCAAGTAGTTCAGTTTTATGTGACTAACTGTGCTCATT

Network for GWHGAAEX001087

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10440.8	WIYLD	5	62	1.90E-22
PF05033.15	Pre-SET	491	639	1.20E-18
PF00856.27	SET	659	781	2.60E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	Biological Process	histone lysine methylation
GO:0018024	Molecular Function	histone-lysine N-methyltransferase activity
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.320
SRP064423	SRR2545915	Juvenile tuber	7.030
SRP108465	SRR5643513	five period of Gastrodia elata	3.600
	SRR5643514	five period of Gastrodia elata	4.810
	SRR5643515	five period of Gastrodia elata	2.470
	SRR5643524	five period of Gastrodia elata	3.490
	SRR5643525	five period of Gastrodia elata	2.720
	SRR5643528	five period of Gastrodia elata	1.740
	SRR5643658	five period of Gastrodia elata	2.380
	SRR5643659	five period of Gastrodia elata	5.090
	SRR5643660	five period of Gastrodia elata	5.730
	SRR5643661	five period of Gastrodia elata	4.900
	SRR5643662	five period of Gastrodia elata	5.340
	SRR5643663	five period of Gastrodia elata	4.630
	SRR5643664	five period of Gastrodia elata	4.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.990
SRP279888	Gastro	Gastrodia elata tuber	4.44
	Juven	Juvenile tuber	5.73
	Mother_Gastro	Mother tuber of Gastrodia elata	2.26
	Mother_Juven	Mother tuber of Juvenile	4.33