Gene detail

Detail information of GWHGAAEX001090/evm.TU.scaffold_104.118

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0522	8.00E-151	Ankyrin repeat protein
nr	gi\|168013264\|ref\|XP_001759321.1\|	0	predicted protein [Physcomitrella patens]
trEMBL	tr\|M0RW22\|M0RW22_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P01140_001}
TAIR	AT1G04780	8.00E-151	Ankyrin repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	3196335	3205605	-

Transcript Sequence
>GWHTAAEX001090 CTCGAACATTAACTATTTTTTTATCTTAAATAAATACAACCCTCGTCCGAAAAATCTCCCTCGCAGCCGCGCGCGCAGCTGCCCCCTACAAATCCTTCCTCACAAACTTTTTATGCACAATTTCCACGATTCGGATGCGCAAAGCCCGTTCTCAAAATTCCATGGATTCCAATTCTTCAGCACCTCGCTCCTTCTTCCTCGAAGATGCGCGAAAAAATGCGTTGCCGAGCTACCGAAGAATCCGTTAAAGAAACCAAATGCTAGATTCCTCCATCTCCAACCCCAATGGACAGAATCGACATTGCAGGGTACGCCCACAGCTCGATCCACAGAGCGGTGCTATCCGGCGACCACGCCGGCCTGAAGAAGATTCTCACATCCATGCCCCAGATATCCTCCCTTCCCCAAACCCTAACCGAAGCCGAATCCATAGCCGAGGAGAGCAAGGCGGATGTCGTCTCGTCCTTCATCGACCAACGCGACGTCCCCAACCGCGAGACGCCTCTCCACCTGGCCATCAAGATCGGCGATGCCTCCGCCGTCGAGCTCCTCATGGCCGCAGGAGCCGACTGCACCCTCCAGAACATCCACGGCTGGAGCTCACTCCATGAGTCAATCTGCGCTCGAGATGACAAAATTGCAAAGATCATTCTGCGGCATTATCAAATCTCCGCCTGTATCAAATGGCGCCGCCGATTGCCCCGCGTCGTCTCCGCCATGAATCGCATGAGGGATTTCTACATGGAGATCGACTTTCATTTCGAGAGCCCTTTGATCCCCTTCATATCGAGGCTCGCCCCCTCCGATACCTACAAGATCTGGAAGAAGGGCTCGAATCTGAGGGCGGATATGACGATCTCCGGCTTCGATGGCTTGAGGATCAAGCGATCTGAAAAGAGCGTGTTGTTCCTGGGAAAGGGCTCGGCGGACGGGAAGGTGAAGCCTGGCAGCCTGTGCGTGATTTCTCATAAGGACAAGGAGGTTCTGAACGCCATGGATGGAGCATGTGATTCTTTCTCTGATGCGGAGTTGAAGCAGGATCTCGATGCCATGCGGAAGACCGATGTTTTTCGCCCCGGGCTTGATGTCACCCGCGCAACGCTTCATCCGCAGATGACATGGTGGAAGAAGCAGAGGTCGGAGATGGTCGGGCCGTGGAAAGCGAAGGTCTACACGATGCATCATGTGGTTTTCAGCCTGAAGTCGAGGGGAGTTCCTGGCGCCATAAACGACGACGACGATGATGATGATGAAGATGACGATAGATTAGGCGAATTGTTGACTGAGGAGGAGAAGAAGAAATTGGAGCTTGCTTTTAAGATGAACTTTTCTGAGCAGAGCACGGGCAGGGATCTGAAGAGGAATGATTTAAGGCAGCCTGTTGTTGGGAAAGAAGAGGTCAGAAGGGTTAATGAAGAGGGTGAATTTAGGAAAGGGTTGAAGCCTGTTCTATGGCTTTCTTCTAATTTTCCATTGCAAACTGAGGAGCTTCTTCCATTGCTTGACGTGCTTGCAAGCAAGGTCAAGGCCGTGCGTCGTTTGAGGGAGCTGCTCACCACTAAGCTTCCAAGAGGCACTTTTCCTGTCAAGGTAGCTATTCCTGTGATCCCAACGGTTAGGGTTCTGGTCAGCTTCACAAAGTTCGAAGAGCTGCTTTCTACCCCGAAGAAGAAGGCATCCCATCTGATGGATTCGCCAGACGCCTGGGCGCAGTGGCTGATTTCCTCTTATTCCGCCGATCAGAATTGCCAGCCCAAGAAAGCATCATCTCCTGAGAAACACGGCAGCTCTTCTTCGGCCCAGGATCCCTTCGCAATCCCCTCAAATTACCAGTGGACAACCTCCGAGGCAAAAAAGCTGAAGAAGCTGCAGCAGAAGAAGATCCAGGAGGCCAACGGTAGGCAAATTAAGAAGCAGCACCAAGGTTAA

Network for GWHGAAEX001090

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13857.5	Ank_5	69	107	9.10E-07
PF11904.7	GPCR_chapero_1	186	516	3.60E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.620
SRP064423	SRR2545915	Juvenile tuber	4.980
SRP108465	SRR5643513	five period of Gastrodia elata	7.670
	SRR5643514	five period of Gastrodia elata	5.540
	SRR5643515	five period of Gastrodia elata	4.250
	SRR5643524	five period of Gastrodia elata	5.250
	SRR5643525	five period of Gastrodia elata	6.810
	SRR5643528	five period of Gastrodia elata	6.700
	SRR5643658	five period of Gastrodia elata	5.330
	SRR5643659	five period of Gastrodia elata	3.560
	SRR5643660	five period of Gastrodia elata	2.780
	SRR5643661	five period of Gastrodia elata	3.830
	SRR5643662	five period of Gastrodia elata	5.580
	SRR5643663	five period of Gastrodia elata	3.520
	SRR5643664	five period of Gastrodia elata	5.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.730
SRP279888	Gastro	Gastrodia elata tuber	2.31
	Juven	Juvenile tuber	3.12
	Mother_Gastro	Mother tuber of Gastrodia elata	12.09
	Mother_Juven	Mother tuber of Juvenile	8.95