Gene detail

Detail information of GWHGAAEX001093/evm.TU.scaffold_104.121

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428224827\|ref\|YP_007108924.1\|	5.00E-153	ABC-1 domain-containing protein [Geitlerinema sp. PCC 7407]
KOG	KOG1235	0	Predicted unusual protein kinase
nr	gi\|743836429\|ref\|XP_010936093.1\|	0	PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9MA15\|Y1796_ARATH	9.00E-124	Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic (Precursor)
trEMBL	tr\|A0A067JC59\|A0A067JC59_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP20323.1}
TAIR	AT3G24190	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	3260017	3300021	+

Transcript Sequence
>GWHTAAEX001093 CACCTACTCCGATAGGCAAGGAGGTTTGTCTCGCATGGAATGTCAGCGGCGATGCTCTTCATATTCATGGCTGGGGAAGGCTTCTCCTCGTCTGAACTATTCTATTTACACTTAGATATCGAGAGCAGAGATCGTGGAAGAGAGACTCTTCCATGGATGCCGCGTCTCAGTTTGTCCTCTGCGGCATAGAACCCCTCCGCCGACCGGTTGCCGCTCGTGTGCTCGGGAACAGACGGTTTGGATTTCGCTGCCATGCGTTTCCGCTTCTCCACAGGTTGCGTGACACTGCCTTCGCTTCGCTGGCAAAGTCAAGGGAGCTTCCCATTGGAGAATCAAATATGTTTGGGAATGCGTCGGATGAGATCGAGAGGGCTAGGGGGAAGATAGAAGGAGAAGAGCAGCTGGTGGCACTCATGAGAGGCCTGCGAGGCCAGAACATCTCCGATTCACAGTTTGCGGATGAGAATATTCAACTCCGTCTTGTTGAGGTAACAGCAGCAGAGAGTACTGATTCCCTACCTCTAGTGTATGATCCTAACATTCTTTTGTTGTATTGGAGCAAACGTCCAAGAGCTGTTGCAACTCGTATTATACAATTACTATCTTTGGCTGGTCGTTTTCTTTCTCACTTAGCATTGGACTTGATAAATAAGAAGATTAAAAAGAATGAACTTGCAAGAGCCATTGAACTAAGGGAGGTTGTAACATCTCTTGGTCCAGCTTATATCAAACTCGGGCAAGCTGTGAGTATTAGGCCAGATATATTATCACCAGCCGCTATGACTGAGCTGCAAAAGCTTTGCGATAAGGTTCCTTCCTTTCCTGACGATGTAGCAATGGCCCTTATTGAAGCGGAGCTTGGTCATCCTTGGCAAGATATTTACTCTGAGCTTAGTGTTTCACCAATCGCTGCTGCTTCTCTTGGGCAAGTTTACAAGGGTCGATTGAAAGAAACTGGTGAATTGGTGGCTATTAAAGTTCAAAGACCTTTTGTTCTAGAAACGGTAACAGTAGATCTATATATTATCAGGAAACTGGGCTTGTTTCTACGAAGGTTTCCACAGGTTTCCATTGATATTGTTGGGTTGGTTGATGAATGGGGTTATCGATTTTTTGAAGAACTTGATTATGTGAATGAAGGAGAGAATGGCACTCTATTTGCAGAAATGATGAGAGAAGACCTCCCTCAGGTTGTGGTGCCAAAGACATATCACAATTATACATCAAGAAAGGTACTCACTACTCAGTGGATTGATGGAGAAAAGCTGTCACAAAGTACAAATAATGATGTCGGAGCACTTGTCAATGTTGGTTTGATATGCTACCTAAAGCAGTTGTTTGATACTGGCTTCTTTCATGCTGATCCTCATCCTGGGAACATGATTCGAACTACCGATGGAAAATTGGCCATTTTAGATTTTGGTCTTGTTACAAGGTTAACTGATGATCAAAAATATGGACTGATTGAAACATTTGCACACTTGATTCATCGTGATTACAATGCAATTGTGAAGGATTTTGTCAAGCTTGATTTCATTCCTGAGGGAGTTAATCTTGAGCCTATAGTACCAGCGCTTGCCAAGGTTTTTGATCAAGCACTTGGAAAGGGTGCAAAGACTATAAATTTTCAAGAATTGGCATCAGATTTGGCACAAATATCTCTTAATTATCCATTCACGTTACCACCTTATTTTGCACTGATTATCAGAGCAATAGGAGTATTAGAAGGTGTAGCACTAGTTCAAAATCCTGAATTTTCCATTTTTAATGAAGCGTATCCTTATATTGCTCAGAGACTCTTAACCGATGAATCACCGCGGTTGAGGAATGCACTGCGATATACTATATTTGGAAAGTCAGGAGTTTTTGATGCTGAAAAGTTTATTGATGTCATGCAAGCATTTGAAAACTTTATTTCTGCTGCTAAAAGTGGAGGTGGTGAGCGTCTAAATGGAAATATGGCTGGCCTCGGTGCACTGTCAAATCAATCAGATTTCTTAGTTCCAGGATATCAAACGATAGTATCTCAGCATCAAGTGCCAATAAAATCAAGGGCAACCCTCTCCTTTCTCCTATCTGATAAAGGAATTTTTTTCCGACAATTCATCTTAGATGAGGTTGTCAAAGCAGTTGATGCAGTTTCAAGAGAGCAGTTGGTGAGAATAAGTGAAGCCTTCGGATTTAGTAGTGCGGTACTGAGTCTTAGCATGGTTTCTCTGAAGCACATGCCTCTTCTTTCAGAGGAGGATGAAATTATTTTAAACAACGTTAAAGAAGTGTTAAAGTTTCTAACTGCTGGAAAGTCAACTAGGGCGTTCAATCAGGAGGTGGATATTGCATTTATCTTGCAAGAGATCATCCCAGTGCTGCCCAAAATCTCTGCTCAAGTGCTGCCAGAGCTGATCAGCAGGCTAACATCTCGCATACTGGCCCGTTTGATCCGAGACACTCTTTTGTAGAAGTCTCTCTTGTGAGTATTTAAACTTCACATGATTTATAAAGCCAAAATCAATTCTGAAAAGTAATATGCTGTCCAACTCAATGCATTATGTATACTGTTGTATCATCTTGCGTTAGAATTTTTCTACATTGCATTGTTCTTAGGATACTCTGCTCAAATGGTAGAATATGGGATCGATTGAGCCCAAAGTGGCCCATTATTGCGAATGGGCTTGATTTTGAAGATCTTCTGAATTAACCCGAATTGTGTGATTCATGTTAAACGACCCAAAATTAACTTGAATTTGGCTCATCCGAGTCGTGACCAAGTTGTTCAAGACCCGATCTTTGGAATATGGGTCGTGCTACAATTTTGGATCAAATCAGTAAAGGCTGAGCTGGGCCTTTAAAAGTGTTTACTTGTCACGGTTAACAGCTCAGGTGGGGAGCCAATTTCAAGGAGGGGGTAGAGAGCAAATAGTGTCGAG

Network for GWHGAAEX001093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03109.15	ABC1	235	353	9.80E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.580
SRP064423	SRR2545915	Juvenile tuber	18.690
SRP108465	SRR5643513	five period of Gastrodia elata	13.330
	SRR5643514	five period of Gastrodia elata	13.770
	SRR5643515	five period of Gastrodia elata	12.270
	SRR5643524	five period of Gastrodia elata	13.500
	SRR5643525	five period of Gastrodia elata	12.800
	SRR5643528	five period of Gastrodia elata	14.450
	SRR5643658	five period of Gastrodia elata	14.410
	SRR5643659	five period of Gastrodia elata	13.620
	SRR5643660	five period of Gastrodia elata	13.100
	SRR5643661	five period of Gastrodia elata	11.380
	SRR5643662	five period of Gastrodia elata	11.280
	SRR5643663	five period of Gastrodia elata	13.560
	SRR5643664	five period of Gastrodia elata	10.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.730
SRP279888	Gastro	Gastrodia elata tuber	11.58
	Juven	Juvenile tuber	15.85
	Mother_Gastro	Mother tuber of Gastrodia elata	12.43
	Mother_Juven	Mother tuber of Juvenile	15.89