Gene detail

Detail information of GWHGAAEX001096/evm.TU.scaffold_104.124

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743853568\|ref\|XP_010940684.1\|	0	PREDICTED: uncharacterized protein LOC105059159 isoform X3 [Elaeis guineensis]
trEMBL	tr\|M0RYX3\|M0RYX3_MUSAM	1.00E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P11140_001}
TAIR	AT2G20210	6.00E-59	RNI-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	3336747	3423429	-

Transcript Sequence
>GWHTAAEX001096 AAGGGTGCTTGTTGGGGAGAAATACGAATGCAGCGAACCCAAATTTACGAGTAATGCAAGTGTGGACATAGGCCAGGCAAGTAGCGTGAGCTAATTGAGAATGAGATCTCATGTACAAGATCATTCTTAGTAGCAAGGTTTGATGTGGGTAGACTGTGAGCGTAGAGCAAAGTTAACGCGAGCATGACGCGAGCTGTTGGAGCAAAATTGAGTGGTCTTGTCATAACCCCTTAGCGCTAAGCGCTAAGCCCTAAGCCCTACAAGAAGTCTCTTCCCCAATCTCCAGCGTCTTACAACTTAACTCATCCGTCTGTTTTATGCTGCTTCTTTTCCTTGAAGCACGGCAGCGTCTCTGCCTTAAGCACCCTCAGCCTCCAGCTTCACCGGACGATGCCCTTCACCTCCAAACGTCTGCCGCAGGCCGTTCCTACCTCCGAGTCTCTGTTCTATTTAGCTCCAGTCTCTTTCGAGATCTTACGGGTTATGGTTTCTACGATGGAAATTCCAACTTTGTACTCCTTGTGTGTGAAGACATTCACACGGAATATCATGCATGGTTTTCAGCACTCACATGAGCTCTTTGAACTTCCTTCAGTTTTTCTTGATAACTTATTGATGATCTTGCCCCCATTGGCTTTGCAAAATATTTATGAGCTATCATTTGGAAGCAATCCTGAGGAAGCCTCTATAGTCAATGGCATTGATAATAACATGAAATGTGGAAGATACTACGACTTAAATACAATGTGGGAGACATTGCACAAGAAGCGATGGACTGAAAATATTAAGAAACATCAGTTTAGTTGCACCATCACTGATCATCCTCATTGTGTTGAAGCACATGAATCTACTACAGTTATTAACTGGCAGCAGCTTTACTGGGAGGGGCATCTACAAGAATGCCTGAATGCAGCTACTGAACAAGCGTTACTTCCTGCCTTTGATGGCAATATTGCTGAACTGGAGACACCAGATGGCATAATGAGCTCGATTGGTCATACTGAAAGTGGGAATTGCAACTGCTCGAAGTTACTATACCACTGCACCAAGTTTGGGCGCTATGCCAGGTGTGTGAAACTTCAGAGCATCCTTTGCCGTGATGAAATTTTTGATTTGTTGAGGACAAGCAAGTTGGAAGCTCTTGTTCTTCGGAGAATAATATCAGGAAGAAATGTTGATGGTGTGTGCAAGCTTATTAGTCAAAATATGGAAACTTTGGTATCTATTGAATTAAGCTATTGTAAACTATCTCCCTTGGATATGGCTATGATTTGCTGCTCTGTTTTTAATAAGGAAAGTCATAGTCATGGTATCAAGCATTTCTCTATTAAATCATCAATTATATTTGGAAGCAATTCTACTTCTATACCGACTGAGCTCTCATTCTTTCTATTATCAGGAAGATCACTCAACTCGGTATGCTTTGCTGATACTCACATGGGCCGAAAATTTGCGGAGGCTATCTTTGAAACCCTGATCAAGTCAAGTAGTTTAGTAAACCTTGAATTGTCTGGAAATGAGCTTGAAGGTTGGCTTACCAAGGCTGGTACGAAATATGTAAATTTGCCTCTTTTTTCAGAATCATGCAATTACCTGCCGTCGTTGATTGTACTAAACTTGAGGGGTAACAATTTGAATAAGAATGATATGGCAGGTCTTCATCAATTGATAATTAAAATGCCAAAGCTATTGAGATTAGACTTAAGTGATAATCCGATCGGGGATGATGGAATGAGGACTTTAATTCCTTTTTTTATCACTACATTTGGGGAGGCTTCTCATTCTTCCGAAATTTTATTAGAAAACTGTGAACTCTCTGGGAAAGGAGTGTGCGAACTCCTGCAAAGCCTTCTCACGAGGAATGGTCAGGTGAAGACTCTGTCTTTGGCAGACAACGACCTTGGGAGTTCTGTAGCAGCACCTCTGGCAAATTTGTTAAGCATGTCTAGGGTAAGAGATCTCAACATTGAAGGTATTGGATTGGAAACAGTTGGATTCATGGAGCTTGGGCGAAAATTGGAAAGAGTGTCTTCGCTTGCTCATATTAACATTAGCAAAAATCGAGGGGGAATGCAAACTGCTCTTTTCATTTTTCACATTGTCTCCCAAGCTCCAGATCTTGTATCAATCAATGCTGGATTTAATTTCATGCCTCCTGAGTCATTACCAATCATACAAGAAGCACTGAGGAAATCAAATGGTAAACTGGAGCAGGTGGACCTGACTGGAAACACAGCCCTGTGTTCGGCCAACATTAGCTCAGCATTATCAGAGTTTCAGTTTCAAGGAAAGCCCATCATAATCCTTCCATCATTTTGCCCTTCAAGTTCTTATGATGATGATCCATAGAAGCTATAGATTAACTAATTGCGTTTTGCAACACTGCACTTGCAGCAAGGGATATAGGATGTAAAAATGTAAATTCATTTTAAGGTGCGGCCACATGTTAAATTTCGTTTTTCTTTTCTTAAATTTTATGCAAGTAACTATTTATAATTACATGGTGTTTAAGTGATTAAAAGAGGCTAAATGGGGTGATTATTCTAGCATGTGAATGGTAAGTTTCTCATGTTATTGCACTAAATTAAGGAATGAGAACACAAGCTTAACCTAGACATTAAAAGAATTGTAGTCTTAAATCTTTATATGTATCCAAGTAAGAACCTCTATGATTGAGCCTAAGTTGATTAAAG

Network for GWHGAAEX001096

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13516.5	LRR_6	431	450	0.0009

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.240
SRP064423	SRR2545915	Juvenile tuber	10.420
SRP108465	SRR5643513	five period of Gastrodia elata	7.480
	SRR5643514	five period of Gastrodia elata	11.770
	SRR5643515	five period of Gastrodia elata	7.060
	SRR5643524	five period of Gastrodia elata	10.490
	SRR5643525	five period of Gastrodia elata	6.830
	SRR5643528	five period of Gastrodia elata	5.080
	SRR5643658	five period of Gastrodia elata	5.180
	SRR5643659	five period of Gastrodia elata	7.640
	SRR5643660	five period of Gastrodia elata	6.710
	SRR5643661	five period of Gastrodia elata	7.410
	SRR5643662	five period of Gastrodia elata	7.090
	SRR5643663	five period of Gastrodia elata	7.620
	SRR5643664	five period of Gastrodia elata	7.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.110
SRP279888	Gastro	Gastrodia elata tuber	9.95
	Juven	Juvenile tuber	9.01
	Mother_Gastro	Mother tuber of Gastrodia elata	12.30
	Mother_Juven	Mother tuber of Juvenile	8.08