Gene detail

Detail information of GWHGAAEX001098/evm.TU.scaffold_104.126

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|42524005\|ref\|NP_969385.1\|	2.00E-159	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOG	KOG0054	0	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nr	gi\|672144984\|ref\|XP_008796397.1\|	0	PREDICTED: ABC transporter C family member 5 [Phoenix dactylifera]
Swissprot	tr\|Q7GB25\|AB5C_ARATH	0	ABC transporter C family member 5
trEMBL	tr\|F6HZR7\|F6HZR7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60183.1}
TAIR	AT1G04120	0	multidrug resistance-associated protein 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	3481497	3497284	-

Transcript Sequence
>GWHTAAEX001098 TCTCTCTCTCTCTCTCTCTTCCTCAAAAGGAGTTTACTGTCACGAAAAGTTGGGCGGAAGTTCACGGTGGAGGTTGGCGGAGGAATCCGGCTTTTACCGGCCTTTCTCGCGTGATTTCTATAAACCGGGGTGGGAAAAGGACGGACCCTTTTTGTTCGGTTCTGCAAATGTATCCTTCGCCGCTCTAGCCGCAGCCTGTGGCCGCCCACTGCATCTCTCTCTCCTTCTCTTTCACCGAAAGGCAATCTTCCTTACGCGGTGCAATGCCCGTATCTGAAACTTTAGAACCGACTTCGTATTCTCCGAAATTTGCATTCAGTTCCGAAATCTGCAATCTGACACCGATACCCTGGCTGGCAGATGGGTTTGTTCTTCATCGGCACCTCTCTTCTCAGTTCCTTCGAAACCCTACCCTTGCCGGCGAAGGTATCCGCCGTAGCTAACCTCACGCTTCTTTTCCTTTTTGTGCTTTCCTCCGCTAGGCGCGTCTTCTACCCATTTCTTTCTCGGGCGGTGCCTTTCAAAGACGATGACGGCGATCTCGTTCCTTCACGCGTTGATTCTAGGGGCTGCGTTAGAGATCCGCTGAACATTGTCGTTGGATGTTGGTATAAGATCGTGTTTTTCTGCTCCAGCTACATACTCTTCCTCAGGATTTCCAATCTCGGTTATGAAGCAGTACACTTGCTTTACTCCGGATCGATCGATTATTCGGTATGTTACCTACCCTGCATCGAGGCAATCGCTTGGCTTGTTATAGTACTCTCGGTATTGCGGAGTAGGTTTAAAGCTTCGGTGAAATTTCCCTTCCTGGTTAGGCTTTGGTGGGCTGTGTCGTTTTGCCTCTGCCTTTATATTGGATATGCTGATACTGTAGGGTTTTTGAATAAGTATGCTCATGTGAACTCTCGTGTTGTGGCGAATTATGCTGCTGCTCCTGCTCTCGCCTTCCTTTCTGTTGTCTCTATTTGTGGGATTTCAGGTATAGATGCGTATAGGGGGGATTCTGTTCTTTACCAGCCTCTTCTTGCTGAAGAAGATGAAGCTGGTTGCCTCAAAGTTACACCCTACAGTGAAGCTGGGTTATTCAGCCTTGCAACACTGTCTTGGCTAAACCCCCTGCTTTCTATAGGTGCAAAGAGGCCCCTTGAGCTAAGGGATGTGCCGTTGCTGGCACAGAAAGATAGGTCCAAGGCTTCATATAAGGCCTTGAACTCAAATTGGGAGAGATTGAAAGCTGAGAACCCTACAAAGCAGCCTTCACTGGCATTGGCGATTCTCCTGTCGTTTTGGAAAGAGGCGATGGTTAATGCTGTTTTTGCTGGATTTAACGCATTGGTATCTTATGTTGGTCCATATATGATAAGCCATTTTGTTGATTACTTGAGTGGAAATATTGCCTTTCCTCATGAAGGTTACATCTTGGCATCAATATTTTTTGTTGCAAAATTTCTGGAGACACTTACAACCAGACAATGGTATTTGGGAGTAGATATATTAGGCATGCATGTTAGATCAGCTTTGACAGCAATGGTTTATAGGAAAGGATTAAGACTTTCAAGCACATCACGACAGAATCATGCCATTGGCGAAATTGTTAATTATATGGCGGTGGATGTGCAAAGGGTGGGTGACTACTCGTGGTATCTTCATGACATATGGATGCTTCCTTTGCAGATTGTTCTTGCTTTGGCAATTTTGTACAAGAATGTTGGAATTGCATCAGTTGCAACGCTTGTGGCAACTATTATTTCAATTTCTATCACCATTCCTCTTGCAAAGATGCAAGAGGAATATCAAGACAACCTTATGGCTGCCAAAGATGATCGGATGAGGAAGACCTCAGAATGTCTGAGAAACATGAGGATCCTAAAACTTCAAGCATGGGAGGATCGCTATAGATTGAAGCTGGAGGAAATGAGAAATGTGGAGTTTAGTTGGCTCCGGAAAGCCTTGTATTCTCAGGCTTTTATTACCTTTATCTTCTGGGGGTCCCCTATTTTTGTGTCAGTTGTGACATTTGCTACTTGCATACTGCTAGGCGGCCAGCTCACTGCTGGTGGTGTGCTTTCTGCGCTCGCCACCTTTCGGATTCTTCAGGAGCCTCTAAGAAATTTTCCAGATTTGGTTTCAATGATTGCTCAGACAAAAGTGTCCGTTGATCGGATTGCAGGGTTTTTGCAAGAGGAAGAGTTACAGCAGGATGCCACTATTGTTATTCCTTTGGGGTTTGCAAGTACAGCGATTGAGATTAGGGATGGTGCATTTTGTTGGGACCCAACTTCCTCTCATCTTACACTGTCATCAATTCAACTGAAAGTAGAGAAGGGGAAGCGTGTGGCTGTCTGCGGTGTTGTAGGTTCTGGAAAGTCAAGTTTCCTCTCTTGTATCCTAGGGGAAATACCCAAAATTTCTGGTGAAGTTAAGATAAGTGGTTCTGCAGCATATGTGTCTCAATCAGCTTGGATACAGTCTGGAAATATTGAGGAAAACATCTTATTTGGGAGTTCAATGGATAAGCAAAGGTACAAGAATGTTATTAATGCTTGCTCATTGAAAAGGGATTTGGAACTGTTACCCCATGGTGATCAAACAATAATTGGTGATAGAGGGATTAATTTAAGTGGTGGCCAAAAACAAAGGGTACAACTTGCTCGAGCACTCTATCAGGATGCTGAAATATATTTACTTGATGACCCTTTCAGTGCAGTTGATGCTCATACAGGGAGCGAGCTGTTCAGGGAGTATATTTTGACTGCTCTGTCAACCAAGACAGTGATATTTGTCACCCATCAAGTTGAATTTCTTCCAGCTGCTGATTTGATACTGGTACTTAAAGAGGGCCGCATAATACAATCCGGAAAATATGATGAACTTCTAAAAGCTGGAACTGACTTCAATGCTTTGGTTTCAGCCCATCACGAAGCAATTGATGCAATGGATATCCCAGAATGCATGCTAGAGGATGCATCAATGCTTCGTAGAAGATCAGCATCTAGTGTTAACAATGTTGTTGACTTGGAAAGTGAGACACTTGGAAATGAGATTCCGTCTGACAGAATTGCTATAAAGGAAAAGAAGAAAGCTAAACGCAGCAGGAAAAAACAACTTGTTCAAGAGGAGGAGAGGGAAAGGGGGAAAATTAGTTTGAAGGTGTACTTATCATATATGGCTGCAGCCTATAAAGGAACACTAATACCTTTAATTATTCTGTCCCAAACAGCATTTCAGGTTCTGCAGATAGCTAGCAACTGGTGGATGGCTTGGGCAAATCCCCAAACACACGGTGATAAGCCAAAAATGACTAGTACGATTCTTCTTGTTGTATACATGGCTCTTGCTTTTGGAAGCTCCTTATTTGTCTTCGCGCGAGCTGTTCTTGTGGCTACATTTGGCCTTGCTGCAGCACAAAAGTTTTTTCTGAAAATGCTTAGGTCTATTTTCCGAGCTCCCATGTTCTTCTTTGATTCCACCCCTACTGGGAGAATATTGAATCGTGTTTCAATAGATCAAAGTGTTGTTGATCTTGATATTCCATTCAGACTTGGTGGGTTTGCATCAACCACAATCCAACTTCTTGGTATCATTGGTGTGATGTCAAAGGTTACATGGCAGGTGTTACTCCTACTTGTACCAATGACCATCGTTTGCTTATGGATGCAGAAATATTACATGGCTTCATCGAGGGAGCTTGTACGCATTGTCAGCATCCAGAAATCTCCAATTATTAATCTTTTTGGAGAATCTATTGCTGGCGCTTCTACTATTAGAGGTTTTGGACAAGAGAAAAGGTTCATCAAGAGAAACTTGTACCTTCTCGATTGCTTTTCACGCCCATTCTTCTGCAGTCTGGCAGCGATTGAATGGCTCTGCTTGCGCATGGAATTGCTATCTACTTTTGTATTTGCTTTTTGCATGACACTTCTTGTTAGTTTCCCACATGGAAGTATTGATCCAAGTATGGCAGGTCTTGCTGTTACATACGGCATTAATTTAAATGCCCGCTTGTCCCGGTGGATATTGAGCTTTTGTAAACTTGAGAATAAGATTATTTCTATAGAGCGTATACATCAGTATTGCCAAATTCCTAGTGAAGCGCCAACTATTATTGGTAACTCCAGACCTCCACCCTCGTGGCCTGGGAACGGGAAGATTGAACTGATAGATTTGCAGGTTCGGTACAAGGAGAGCCTGCCGATTGTCCTTCATGGTGTAACTTGCATGTTTCCCGGTGGTAAAAAAATTGGTATTGTTGGGCGCACCGGAAGCGGGAAATCTACCCTAATACAAGCACTTTTCCGCCTGATCGAACCGGCTCATGGGAAGATAATCATTGATGATGTGGACATTTCTACCATAGGCCTTCATGATCTTCGTAGCCGTCTTAGTATCATCCCACAGGATCCTGCCTTATTTGAAGGCACCATTAGGGGCAATCTTGATCCTCTCGAAGAGCACTCTGATCATGAAATTTGGCAGGCACTTGACAAGTGTCAGCTTGGCGAGGTCATCCGTCAAAAGGCCCTAAAACTAGACTCTCCAGTACTCGAGAATGGAGAAAATTGGAGCGTTGGGCAGCGTCAGCTTGTCTCGTTGGGGAGAGCCTTGTTAAAGCAAGCTCAGATAATTGTTCTTGATGAAGCAACGGCCTCTGTTGATACGGCGACCGATAACCTGATCCAGAGGATCATACGATGTGAATTCAAGGACTGCACCGTCTGCACAATCGCTCACCGCATCCCCACCGTGATTGATAGCGATCTTGTTTTGGTCCTTAGTGATGGGAAAGTTGCGGAATTCGACAGCCCACAGAGGCTCTTAGAGGACAAGACATCAATGTTTCTGAAGCTAGTTTCCGAGTACTCCATAAGATCCAGCAGTATATCAGAGACCTGAAAGCAGGAGCTTTGATACAGTACACTGTACTTTGGCACATCGAACGATATTAAAAGCCCTATGACGCCCCTCGAGGAAGATGGACGGTACGTCGATTGTCCCCCTTAAGAGTTGATAGCTTTCTTCGGATTGAGCTGTATAAATATTAGGAGATGCACAAGAAATAGGCCATAGAAATTATTTTTGATATTTTGTCAAGTTGCTTTGGATGGTGAGGTGTAATGAGAAATAAAGGCAGTTTTCTGTTCCGCTTTTCCCCCCATTTTAAAAATAGTGCACCTATCCTATGTTGCAATTAAACCTACTTTTTCTTCGCGTCAATATATAGATAGATTTCCTTGTTGAACTTTGATGTGTATTATTGCAATATAGGGATAGTTGGTAGTTATTTTTTAAATATTGAAGTGATTGTTAGATATGAATTTTAAAATCTCTTACTACATTGAAATGATGGGATGCTTTTGTTAGGAAAAAAAAC

Network for GWHGAAEX001098

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	319	583	1.30E-26
PF00005.26	ABC_tran	647	781	6.70E-20
PF00664.22	ABC_membrane	950	1188	1.10E-27
PF00005.26	ABC_tran	1282	1430	4.00E-29

Protein Sequence

>GWHPAAEX001098
MGLFFIGTSLLSSFETLPLPAKVSAVANLTLLFLFVLSSARRVFYPFLSRAVPFKDDDGDLVPSRVDSRGCVRDPLNIVVGCWYKIVFFCSSYILFLRISNLGYEAVHLLYSGSIDYSVCYLPCIEAIAWLVIVLSVLRSRFKASVKFPFLVRLWWAVSFCLCLYIGYADTVGFLNKYAHVNSRVVANYAAAPALAFLSVVSICGISGIDAYRGDSVLYQPLLAEEDEAGCLKVTPYSEAGLFSLATLSWLNPLLSIGAKRPLELRDVPLLAQKDRSKASYKALNSNWERLKAENPTKQPSLALAILLSFWKEAMVNAVFAGFNALVSYVGPYMISHFVDYLSGNIAFPHEGYILASIFFVAKFLETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSTSRQNHAIGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIVLALAILYKNVGIASVATLVATIISISITIPLAKMQEEYQDNLMAAKDDRMRKTSECLRNMRILKLQAWEDRYRLKLEEMRNVEFSWLRKALYSQAFITFIFWGSPIFVSVVTFATCILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSMIAQTKVSVDRIAGFLQEEELQQDATIVIPLGFASTAIEIRDGAFCWDPTSSHLTLSSIQLKVEKGKRVAVCGVVGSGKSSFLSCILGEIPKISGEVKISGSAAYVSQSAWIQSGNIEENILFGSSMDKQRYKNVINACSLKRDLELLPHGDQTIIGDRGINLSGGQKQRVQLARALYQDAEIYLLDDPFSAVDAHTGSELFREYILTALSTKTVIFVTHQVEFLPAADLILVLKEGRIIQSGKYDELLKAGTDFNALVSAHHEAIDAMDIPECMLEDASMLRRRSASSVNNVVDLESETLGNEIPSDRIAIKEKKKAKRSRKKQLVQEEERERGKISLKVYLSYMAAAYKGTLIPLIILSQTAFQVLQIASNWWMAWANPQTHGDKPKMTSTILLVVYMALAFGSSLFVFARAVLVATFGLAAAQKFFLKMLRSIFRAPMFFFDSTPTGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLLGIIGVMSKVTWQVLLLLVPMTIVCLWMQKYYMASSRELVRIVSIQKSPIINLFGESIAGASTIRGFGQEKRFIKRNLYLLDCFSRPFFCSLAAIEWLCLRMELLSTFVFAFCMTLLVSFPHGSIDPSMAGLAVTYGINLNARLSRWILSFCKLENKIISIERIHQYCQIPSEAPTIIGNSRPPPSWPGNGKIELIDLQVRYKESLPIVLHGVTCMFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAHGKIIIDDVDISTIGLHDLRSRLSIIPQDPALFEGTIRGNLDPLEEHSDHEIWQALDKCQLGEVIRQKALKLDSPVLENGENWSVGQRQLVSLGRALLKQAQIIVLDEATASVDTATDNLIQRIIRCEFKDCTVCTIAHRIPTVIDSDLVLVLSDGKVAEFDSPQRLLEDKTSMFLKLVSEYSIRSSSISET

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05665	ABCC1	ABC transporters	map02010
		Sphingolipid signaling pathway	map04071
		Vitamin digestion and absorption	map04977

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.480
SRP064423	SRR2545915	Juvenile tuber	34.610
SRP108465	SRR5643513	five period of Gastrodia elata	32.980
	SRR5643514	five period of Gastrodia elata	28.990
	SRR5643515	five period of Gastrodia elata	35.410
	SRR5643524	five period of Gastrodia elata	38.770
	SRR5643525	five period of Gastrodia elata	25.070
	SRR5643528	five period of Gastrodia elata	33.510
	SRR5643658	five period of Gastrodia elata	20.610
	SRR5643659	five period of Gastrodia elata	24.350
	SRR5643660	five period of Gastrodia elata	24.500
	SRR5643661	five period of Gastrodia elata	24.440
	SRR5643662	five period of Gastrodia elata	25.360
	SRR5643663	five period of Gastrodia elata	24.090
	SRR5643664	five period of Gastrodia elata	25.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.480
SRP279888	Gastro	Gastrodia elata tuber	22.28
	Juven	Juvenile tuber	48.42
	Mother_Gastro	Mother tuber of Gastrodia elata	34.99
	Mother_Juven	Mother tuber of Juvenile	91.22