Gene detail

Detail information of GWHGAAEX001103/evm.TU.scaffold_104.132

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428207876\|ref\|YP_007092229.1\|	5.00E-16	WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
KOG	KOG0266	2.00E-115	WD40 repeat-containing protein
nr	gi\|743853625\|ref\|XP_010940699.1\|	0	PREDICTED: uncharacterized protein LOC105059171 isoform X2 [Elaeis guineensis]
Swissprot	tr\|P93107\|PF20_CHLRE	2.00E-11	Flagellar WD repeat-containing protein Pf20
trEMBL	tr\|M0RXE0\|M0RXE0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P05820_001}
TAIR	AT1G04140	2.00E-115	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	3712775	3738480	-

Transcript Sequence
>GWHTAAEX001103 GCTCTCCATCTATACTCTGATACTTTTTACAGCCGCGAAAAATCACGTTGAGCCGCTAGCGCAGAACCGAGCCTTCTTCAGTTCCTTCTCTCTTCCTTTTCTCTCCGGCCGGCTCCTTCCCCCCTTCTCTCAATTTTCTCTCTCTCCTGCCATTTTGTTCCTCCGACCTAGGGTTGGCCCATGCATGGTCGAACCCTAGCACCTTCATGGTTGCCCCTGTTCTCTCCATCATCCTTTTTCTTCTTTCTCTTCTTCCTCCAACACAAATCCTGACCCTATTACCTTCTTCCTCTTCTCTTCTTTCTCCCCTTCTTTATTTCTCATTTGTTTTTTTGTGATTTTAATACAAAATCTGCATTAATTTTAAAATACCTCCCTCTGATCGGAGAGCGTCTTGCCCCCAATTTTACTTCCCTACGCCGATTTCGACACTGACAAAGTGCTTGTGGCATTCTGATGACTTCCGCACGCCCTTCAAGGTTGTAAATGGCTATCGCTAAAATTGCGGACTGTATATACTATAATTGTGGAGAATCATGCTAAAAGATAGAAATGACTCAACTTTGGTTTGATGATGCGAAATATTTGTCTTCAACATTTTCTAGTGTTCACCCCGTGCAACAGTCTTCAACTCATTCCCCTCAAAGAAACAGAAACATTTACCAGTTTCTTGCAAGGAGAGAAATCTCACCTAGAGCAAAACGTTCATCAAAAAAAATCTGGGGAGAAACTTCAAAATGGAGAGTTGATTGCTCTGGGTCAATATACGATGTGACAGATGCAAAACATGCTTTGCTTTCTTGGGTTGAAGCGCAGTCATTTCATCATTTGTTAGCTAAGTACTGCCCACTTCTTCCTCCTCCAAGGTCCACAATAGCTTCAGCATTTAGCTCTGATGGGAAAACACTTGCCTCAACACACGGTGATCATACAGTTAAGATAATTAATTGCCATACTGGAAGGTGCTTAAAAGTTTTGAGTGGTCACCGCCGAACACCATGGGTGGTTAGGTTCCACCCTCTATACCCAGAAATTCTTGCCAGTGGCAGTTTGGATCACGAAGTTCGTATCTGGGATTCACATACTGCCGATTGCATAGGGTCACGTGATTTTTATCGTCCTATTGCTTCTATTGCTTTCCATGCTCAAGGAGAACTTCTTGCTGTTGCTTCAGGTCACAAGCTGTACATATGGAACTACAATAGAAGAGGGGAAACATCTTCCCCAACAATTGTTCTGAAGACACGACGCTCATTAAGAGCTGTCCATTTTCATCCACATGGTGCCCCATTTCTGTTAACCGCCGAGGTAAACGATCTTGATTCTCCAGATTCAACGTTGACACTTGCAACCACATCTGGTTATTTGCAATATCCACCTCCTGCTATTCTTTTTGCCAACGTTAATTCTGGTCTTCAGGCTCTTGTGGATGCTAATGTGCCACTTGTTGACAGGGCTTTTATTTCTGCAAATGATCAACAAAGATCAGATGGTCCTATATCTAATCTACAAGGATCACTGAATTGGGGAAGCCAGCTGGACAGTTCAGTGACTCTTATGGAAATGTCTCCTGCAGAAACTCATGGTTCAAGTTTTATTGACACCGATTTTCTTTCTTTGGCTCATAGAAATGAAACCTCAAATTATGGTTCAATTGTAGGGAGTACGGACTCAACAAATGGACAGCTTGGCAGTTGGTTTCAAGATCGATATACTGGCAATGCTGAGAGATCTGATGTTGCTAATGCTGTACCAGTGACTCTTAGGATACCTATCAAGCAAATTAGAACTGGCACTGACAACAATCGTGCCTTAAGTTCCCACAGCTTTTCTGGAAATACTGAAATTCAAATGCTTCTAAGGAGCATGGAAGCAGGACAAGTTCAGCAATTCATTCCTGTCACTGATTCAGCTAGTTGGGAACTTCCTTTTTTGCAGGGTTGGCTTATGGGCCAATCTCATGCAGGCTTGCACTCATTGTTCCAAGCGAACAGTACGTTTCATAGTAGTCTTTCAACAGCTTTTGGCACTGGCCCCAACTTATTGGCCGATCTTTCATATAATCGAAGCATGGAAGCTTTATTAGCATCTTCAGTAACAGTGCCAGCAGCAGGCCAGCCTCGGCTACCTGGACGAACGGTTCCTCGTAGTCGGAATCGTTCCCGTGCCAACGCTTCAACTGGTTCTGGCGATGGTTTAACTTTTCTGAATGCCCAGACTGGCGAGCTGCAGCCACATTCTGGACCTGGTATTGAAACTGAAAATGCTTCTTCACTGGCTACTGCAACAACTGCAGAGCTACCTTGTACTGTGAAACTTAGAATATGGCCGCACAATATTCAAGCTCCATGTTCCTCCCTAGATCCAGAAACATGCCGCTTAACCATACCACATGCTGTCCTTTGCAGTGAAATGGGTGCCCATTTTTCTCCGTGCGGAAGGTTCTTAGTAGCTTGTGTTGCATGCATGCTATCTGACTTAGAAGGTGATTCTGGACTTCAATCACAGGTGAGCCTTGATGCTACCGATGTTGCTACCTCTCCGACGCGTCATCCAATTTCTGCACACAAGGTCATGTATGAGCTTCGAGTCTATTCACTTGAAGAGGCAACATTTGGCTCAGTGTTGGCTTCACGAGCAATAAGAGCTGCTCATTGTTTGACATCTATTCAGTTTTCTCCTACATCAGAACACATATTACTAGCATATGGACGCCGCCATGGTTCACTTCTTAGAAGTATTCTCATTGATGGAGAGACTGCAATCCCTATCTACACAATCTTGGAGATTTATAGAGTTTCAGACATGGAACTTGTTAGAGTTCTCCCTAGCGCAGAAGATGAGGTTAATGTTGCATGTTTTCATCCTCTTCCTGGAGGTGGTCTTGTTTATGGAACCAAGGAAGGGAAGCTTAGAATTCTTCATTATGATGGTCCACGGGATATAAATGGCACGGGCTCAAGGTTTATGACTGATGAAAACATGCTTGAGGTGCAGAGTACGCCCTAGAATGCTTTTGACTATTTGCAAGCTCTATCGGCGAGGTTGTGTTCATTTTACATGGTGCCACTTCCAACTTATTTGCATATTATGAATTCTTTTCATAAGCTTTTTAGCGAAGATTGTAATGATGTGATTAATCTGATTGTATTACGAAACCCTAAAGATAATAATTATTGCTCTTTCATTTGATGAATTAAACTGAAATTTGGAATATTTTAAAGAAAATGAAGAGTGAAAAAATTGTAAGATCATATTATGTTTTTATTGATGTGGAAATTTTTTTGGTGAGGAATGAGTTTCTTGACTGATAAAAGTATTTGATACAATTGTGAAGAGATGTCAACTGGGGGAACATTGTGATACC

Network for GWHGAAEX001103

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	136	175	0.0011

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K17985	AMBRA1	Autophagy - animal	map04140
K17985	AMBRA1	Mitophagy - animal	map04137

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.840
SRP064423	SRR2545915	Juvenile tuber	46.540
SRP108465	SRR5643513	five period of Gastrodia elata	43.590
	SRR5643514	five period of Gastrodia elata	52.550
	SRR5643515	five period of Gastrodia elata	48.200
	SRR5643524	five period of Gastrodia elata	53.710
	SRR5643525	five period of Gastrodia elata	54.400
	SRR5643528	five period of Gastrodia elata	53.910
	SRR5643658	five period of Gastrodia elata	63.290
	SRR5643659	five period of Gastrodia elata	37.140
	SRR5643660	five period of Gastrodia elata	37.240
	SRR5643661	five period of Gastrodia elata	37.980
	SRR5643662	five period of Gastrodia elata	39.690
	SRR5643663	five period of Gastrodia elata	40.520
	SRR5643664	five period of Gastrodia elata	39.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	69.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	47.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.600
SRP279888	Gastro	Gastrodia elata tuber	47.05
	Juven	Juvenile tuber	57.90
	Mother_Gastro	Mother tuber of Gastrodia elata	63.17
	Mother_Juven	Mother tuber of Juvenile	68.12