Detail information of GWHGAAEX001108/evm.TU.scaffold_105.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18840Uncharacterized conserved protein
nrgi|743798880|ref|XP_010925343.1|0PREDICTED: uncharacterized protein LOC105047910 [Elaeis guineensis]
trEMBLtr|W1PA52|W1PA52_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERN03875.1}
TAIRAT4G394500Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000105483115538175+
Transcript Sequence

Network for GWHGAAEX001108

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14649.5Spatacsin_C279930915.30E-75
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.670
SRR2545915Juvenile tuber24.060
SRP108465SRR5643513five period of Gastrodia elata8.420
SRR5643514five period of Gastrodia elata10.220
SRR5643515five period of Gastrodia elata9.620
SRR5643524five period of Gastrodia elata9.750
SRR5643525five period of Gastrodia elata12.670
SRR5643528five period of Gastrodia elata10.990
SRR5643658five period of Gastrodia elata12.510
SRR5643659five period of Gastrodia elata8.770
SRR5643660five period of Gastrodia elata11.220
SRR5643661five period of Gastrodia elata7.760
SRR5643662five period of Gastrodia elata7.720
SRR5643663five period of Gastrodia elata9.760
SRR5643664five period of Gastrodia elata9.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.210
SRR6049655Rhizomagastrodiae_C368-T10_good_19.990
SRR6049656Rhizomagastrodiae_C368-T07_good_112.950
SRR6049657Rhizomagastrodiae_C368-T07_good_115.830
SRR6049658Rhizomagastrodiae_C368-T04_good_121.140
SRR6049659Rhizomagastrodiae_C368-T04_good_125.320
SRR6049660Rhizomagastrodiae_C368-T01_good_117.510
SRR6049661Rhizomagastrodiae_C368-T04_good_120.020
SRR6049662Rhizomagastrodiae_C368-T01_good_110.320
SRR6049663Rhizomagastrodiae_C368-T01_good_114.480
SRR6049664Rhizomagastrodiae_C368-T10_good_110.470
SRR6049665Rhizomagastrodiae_C368-T10_good_110.470
SRP279888GastroGastrodia elata tuber 18.21
JuvenJuvenile tuber17.78
Mother_GastroMother tuber of Gastrodia elata 17.63
Mother_JuvenMother tuber of Juvenile 22.17