Gene detail

Detail information of GWHGAAEX001113/evm.TU.scaffold_105.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|330508351\|ref\|YP_004384779.1\|	8.00E-13	TPR-repeat-containing protein [Methanosaeta concilii GP6]
KOG	KOG1173	0	Anaphase-promoting complex (APC), Cdc16 subunit
nr	gi\|672128790\|ref\|XP_008787886.1\|	0	PREDICTED: anaphase-promoting complex subunit 6 [Phoenix dactylifera]
Swissprot	tr\|B3DNN5\|CDC16_ARATH	0	Anaphase-promoting complex subunit 6
trEMBL	tr\|F6H2M3\|F6H2M3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46241.1}
TAIR	AT1G78770	0	anaphase promoting complex 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000105	1693837	1727809	+

Transcript Sequence
>GWHTAAEX001113 GGCGGTGTGATTTTTAAAAGCGTCGAAGCTTCAAAAGTGGAAACCCTAAAATTTTCTCTGGCTTTCCTTGGATTTTGAACTCGACAGACTGAAGATTTATCTCAAAAGCCAGGAAATAAAAGAGCAGTAGGGTGCTACCGGTGCAAGAACACATGTTGGAGGAAGAAGTAGAGAGGCTGAGGGGGCTGGTGAGGGACTGCCTCAGCAAGCATCTTTACTCCTCTGCCATCTTTTTCGCCGATAAAGTGGCTGCGTCAACATCTGATCCAGCGGACATATACATGCAGGCTCAGGCCCTCTTCCTTGGGCGTCAATACCGCCGCGCACTGCACCTTCTAAACTCTTCTTCCATTGTTCTTCGTGACCTTCGCTTCCGCTACCTCGCCGCCAAATGCCTCGAGGAACTGAAAGAATGGCATCAGTGCTTGACAATGCTGGGCGATGCAAAAGTGGATGAGCACGGAAACTTGAATAGCCCGAAGGATTGCAGTCCCATGTACTTGGACAAGGATGGGGAGGATCATGACATCAACATTACAGCAGCGGTCTGTTATTTACGAGGCAAAGCATATGAAGCTTTGGAGAACCGTATCCAAGCCAAACTATGGTACATAGCAGCTGTCAAGTCTGACCCATTTTGCTATGAGGCTTTAGAAAGTTTGGTTGACAAGCACATGTTAACATGGGAGGAAGAATCAAGTCTGTTATCATCTTTGCAATTTGGCAAGGAGGATGGATGGCTGTCAACGATTTATTCATGCTTAGTAAAAAGGCATGAAAAAGAAAATGTTGTGGTAGAAAAGCTTAGGGATATTGAGAGGGACAGTCCTTGCTCTACTTCAAGTTCACCTTTCATACTTGCGCTAAAAAATAATGCTGATTTATTGGCTTGCAATGCTGAGTACTATTATCAGCTTGGGGAGTATTACAAATGTTTTGAGCTGACCTCTTCACTACTTGCAAAAGATCCTTTTCATATGAAATGCACTTTAGTTCATTTGGCTGCTGCTATGGAGCTTGGGCATTGTAATGATCTTTACCTTCTGGCATGCAATTTGATTAAGGATCATCCTCTAAAAGCTATTTCATGGTTTGCTATTGGTTGCTACTACTTCAGCATAAAGAAGTACGACCAAGCAAGAAAACATTTCAGCAAGGCAACCAGTGTCGATGCCACCTTTCCACCTGCTTGGATTGGCTCTGGAAATTCTTATGCCTTACAGGAAGAGACTGATCAAGCAATGCTTGCATATCGCACAGCTGCACGCTTATTTCCTGGGTGCCATCTGCCAACATTATATATTGGGATGGAGTATATGAGAACACACAATTTCAAACTTTCTGAACATTTTATTTTGCAGGCACGGACAATATGCCCTACAGATCCTCTGGTCTATAATGAACTTGGTGTTGTTTCTTATCATATGAAGGAGTATCAGAAAGCTGTTCGTTATTTTGAAATGACTTTGAATAATGTTGCATCTTCGATGAGTGAACTGTGGGAGCCCACTTTAGTGAATCTTGGTCACTCACAAAGGAAGTTAAAGATGTATCACAAGGCTGTATCAAGTTATGAGAAAGCGCTTGCTCTTTCAACTCAAAGCATGAGTGCATTTGCTGGTCTTGCATATACTTATCATCTAATGGATAACCTGGATGCTGCTGTTACATACTATCACAAGGCTCTGTGGCTGAAACCTGAAGACCAGTTTTGCACGGAGATGCTTACGATGGCGCTAGAGCTGCAAACTCGCGGCATTTGCGTATGATATTTTCTCAACTGCTGCTCTATTTTTGAAATTTTATCTATTTATTATTTTTTCAATTATTATTGTATATTTACTATGTAAATTTTAAAAATAAATAACAATGTTGCCTTTTTATTGACTATATATATATATATAT

Network for GWHGAAEX001113

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12895.6	ANAPC3	19	97	3.50E-20
PF13181.5	TPR_8	131	162	0.035
PF13432.5	TPR_16	315	376	0.00012
PF13181.5	TPR_8	453	481	0.00037
PF07720.11	TPR_3	490	515	0.0052

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03353	APC6, CDC16	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.710
SRP064423	SRR2545915	Juvenile tuber	12.370
SRP108465	SRR5643513	five period of Gastrodia elata	8.280
	SRR5643514	five period of Gastrodia elata	9.630
	SRR5643515	five period of Gastrodia elata	8.810
	SRR5643524	five period of Gastrodia elata	9.990
	SRR5643525	five period of Gastrodia elata	3.760
	SRR5643528	five period of Gastrodia elata	3.110
	SRR5643658	five period of Gastrodia elata	4.900
	SRR5643659	five period of Gastrodia elata	12.950
	SRR5643660	five period of Gastrodia elata	13.560
	SRR5643661	five period of Gastrodia elata	11.370
	SRR5643662	five period of Gastrodia elata	9.580
	SRR5643663	five period of Gastrodia elata	9.620
	SRR5643664	five period of Gastrodia elata	12.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.160
SRP279888	Gastro	Gastrodia elata tuber	10.26
	Juven	Juvenile tuber	12.85
	Mother_Gastro	Mother tuber of Gastrodia elata	10.77
	Mother_Juven	Mother tuber of Juvenile	12.78