Detail information of GWHGAAEX001114/evm.TU.scaffold_105.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220919241|ref|YP_002494545.1| | 4.00E-46 | amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1] |
| KOG | KOG1237 | 0 | H+/oligopeptide symporter |
| nr | gi|672110932|ref|XP_008798043.1| | 0 | PREDICTED: protein NRT1/ PTR FAMILY 8.3-like [Phoenix dactylifera] |
| Swissprot | tr|P46032|PTR2_ARATH | 0 | Protein NRT1/ PTR FAMILY 8.3 |
| trEMBL | tr|A6YJX4|A6YJX4_9MAGN | 0 | Peptide transporter {ECO:0000313|EMBL:ABR32183.1} |
| TAIR | AT2G02040 | 0 | peptide transporter 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000105 | 1755123 | 1768284 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001114
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 113 | 544 | 1.50E-132 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006857 | Biological Process | oligopeptide transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.370 |
| SRR2545915 | Juvenile tuber | 23.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.510 |
| SRR5643514 | five period of Gastrodia elata | 35.110 | |
| SRR5643515 | five period of Gastrodia elata | 34.130 | |
| SRR5643524 | five period of Gastrodia elata | 40.520 | |
| SRR5643525 | five period of Gastrodia elata | 79.520 | |
| SRR5643528 | five period of Gastrodia elata | 78.740 | |
| SRR5643658 | five period of Gastrodia elata | 105.070 | |
| SRR5643659 | five period of Gastrodia elata | 20.110 | |
| SRR5643660 | five period of Gastrodia elata | 24.680 | |
| SRR5643661 | five period of Gastrodia elata | 20.830 | |
| SRR5643662 | five period of Gastrodia elata | 20.900 | |
| SRR5643663 | five period of Gastrodia elata | 20.200 | |
| SRR5643664 | five period of Gastrodia elata | 26.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 56.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 46.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 82.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 88.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 123.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 67.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 79.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.17 |
| Juven | Juvenile tuber | 100.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 91.09 | |
| Mother_Juven | Mother tuber of Juvenile | 124.13 |