Gene detail

Detail information of GWHGAAEX001117/evm.TU.scaffold_105.30

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|226315099\|ref\|YP_002774995.1\|	9.00E-15	esterase [Brevibacillus brevis NBRC 100599]
KOG	KOG2369	2.00E-102	Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase
nr	gi\|743804045\|ref\|XP_010927089.1\|	0	PREDICTED: lecithin-cholesterol acyltransferase-like 4 [Elaeis guineensis]
Swissprot	tr\|Q71N54\|LCAT4_ARATH	0	Lecithin-cholesterol acyltransferase-like 4
trEMBL	tr\|M0RS75\|M0RS75_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P14450_001}
TAIR	AT3G03310	2.00E-102	lecithin:cholesterol acyltransferase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000105	1968039	2045561	-

Transcript Sequence
>GWHTAAEX001117 CGGTATCACTCTATACGCCTCGGACTACGGCATCTTCGGTCAAACGGATAATCGTCCTGTTGTTTTAACTAAGCTTTAGCTTTTCTTCTTCGCTCGAGAGCCGAAGGGCATTTCCCCCCTCCAGTATCCATCTTGATCCAACTTGTAGCCCATAGATTGTTTTGTTTCTTCGTCACGTTTCCCCTGTTTCTTATCTCCAAAATAATCTGTACAAGGGCTCAAACAGAGGAGCATCTTCCAATTCTTCTGAATATTGCCAGCAAGGGACATTGCTCTTGGATGCACAGAGATGTCAAAGCTGGAGGATTTCATGGAGTCAATCAGGCTGTGGCTTCGGATTGTCAAAAAGCAGAAGCCCATTGTGAACCCTAATCTAGACCCAGTTCTTCTGGTCCCTGGAATTGGTGGTTCTATTCTGCATGCTGTGGATGGTGATGGCAATCATGAGAGAGCATGGGTTCGAATCCTTGGAGCCGATAGTGAGTTCAGGAAGAAACTCTGGTCGAGGTTTGATCCTGCTACTGGGAAAACTGTTTCATTTGATGAAAAGATTGAAATCGTTGTTCCTGAAGATAGATATGGCCTCTATTCTATTGATGTTTTGGATCCGGATATGGTAATTGGGGGTGACTGCGTTTTCTATTACCATGATATGATAGAGGAAATGTTAAAATGCGGATACCAAGAGGGTAAGACTCTATTTGGATTTGGATATGATTTTCGACAAAGTAATAGACTTCAGGAAACGCTTGATAGATTTTCTGCAAAGTTAGAGTCCATATTCAGTTCATCTGGAGGAAGAAAATTGAATCTTGTAACTCATTCCATGGGTGGATTGTTGGCAAGGTGCTTTTTAAGTTTACATGGTGATGTATTTGAGAAATATGTTCAAAACTGGATATCAATTGCTGCGCCATTTCAAGGGGCACCCGGATACATCACAACTAGCCTCTTGAATGGGATATCTTTCGTTGAAGGTTGGGAGGAAAATTTTTTTATTTCTAAATGGTCCATGCATCAACTGCTGATTGAATGTCCGTCCATTTATGAACTTATGGGAAGTTATAATTTTTGCTGGGAAGATACTCCCGTTTTGCAAATTTGGAGAAAAAGATATGATAATTCAGGTCAAGCTCATACATTGCTAGAATCGTATGAAGCGGATGATGTTACTATTATAATGAATGAAGCGCTCTCGGGCAACAGTATCTCATGTGATGGCATGGAAGTTCCTTTGCCTTTCAACCTTGATAATTTGATGTGGGCTAATGAAACAAGAAAAATTATATCAAGTGCTAAGATTCCAGAAACAATCAAATTTTTCAACATATATGGGATTAATCTTGACACACCTCACACTCTTTGCTATGGGAGTCCAAAAGCACCTATTGTGGAACTTAAAGAGCTTATGTCTACCCAGCCCAAGTATATATGCGTTAATGGGGACGGAACAGTTCCAGTAGAATCAGCCAAAGCTGATGGGTTTGATGCTGTGGCAAGGGTGGCGGTTCATGCAGAACACCGAGGAATAGTTAGGGACCGCCACGTTTTCAGAATACTGAAGCACTGGCTGAAGGCCGGAGAGCCAGACCCTTTCTATAACCCCATCAATGATTATGTTATTCTTCCCAACACACTTGATGTTATGGAGAAAAGCCTGCAGCAGATGATGAAACTCACAGCAATCAAGGATGATTGGGAGCTCATATCCTCCGAAGAAGAAGCAGCAGCAACAGTGCAGCAGCAACAGCAGCTACAGATGGCTGAAGCTCAAGTCTCTCAAATATCTGTTGGGGTTGCCGTTATTGGGTAAGTTGGAAGATTATGATATTGCTATTTTATAAAAATAATGATGATACCATGGCTTTTATGCTTAATAATACATTATATTTTTAATCTTTTGTGTATATTTAAATATATATACTTTATCTGACAAATACTTTGTATA

Network for GWHGAAEX001117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02450.14	LCAT	97	395	2.80E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22389	LCAT3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006629	Biological Process	lipid metabolic process
GO:0008374	Molecular Function	O-acyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	109.110
SRP064423	SRR2545915	Juvenile tuber	91.530
SRP108465	SRR5643513	five period of Gastrodia elata	45.530
	SRR5643514	five period of Gastrodia elata	48.690
	SRR5643515	five period of Gastrodia elata	46.950
	SRR5643524	five period of Gastrodia elata	47.550
	SRR5643525	five period of Gastrodia elata	68.050
	SRR5643528	five period of Gastrodia elata	61.710
	SRR5643658	five period of Gastrodia elata	42.360
	SRR5643659	five period of Gastrodia elata	38.170
	SRR5643660	five period of Gastrodia elata	41.080
	SRR5643661	five period of Gastrodia elata	42.680
	SRR5643662	five period of Gastrodia elata	38.190
	SRR5643663	five period of Gastrodia elata	38.100
	SRR5643664	five period of Gastrodia elata	43.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.870
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.610
SRP279888	Gastro	Gastrodia elata tuber	36.24
	Juven	Juvenile tuber	59.31
	Mother_Gastro	Mother tuber of Gastrodia elata	60.42
	Mother_Juven	Mother tuber of Juvenile	69.26