Detail information of GWHGAAEX001120/evm.TU.scaffold_105.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15610513|ref|NP_217894.1| | 2.00E-12 | Halimadienyl diphosphate synthase [Mycobacterium tuberculosis H37Rv] |
| nr | gi|672178024|ref|XP_008809130.1| | 0 | PREDICTED: ent-kaur-16-ene synthase, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|Q0JA82|KS1_ORYSJ | 0 | Ent-kaur-16-ene synthase, chloroplastic (Precursor) |
| trEMBL | tr|J3M1B2|J3M1B2_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G31870.1} |
| TAIR | AT1G79460 | 0 | Terpenoid cyclases/Protein prenyltransferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000105 | 2182266 | 2250968 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001120
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01397.20 | Terpene_synth | 238 | 432 | 1.80E-42 |
| PF03936.15 | Terpene_synth_C | 477 | 747 | 1.80E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04121 | E4.2.3.19 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Diterpenoid biosynthesis | map00904 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0010333 | Molecular Function | terpene synthase activity |
| GO:0016829 | Molecular Function | lyase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.230 |
| SRR2545915 | Juvenile tuber | 13.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.220 |
| SRR5643514 | five period of Gastrodia elata | 8.940 | |
| SRR5643515 | five period of Gastrodia elata | 9.500 | |
| SRR5643524 | five period of Gastrodia elata | 9.110 | |
| SRR5643525 | five period of Gastrodia elata | 9.390 | |
| SRR5643528 | five period of Gastrodia elata | 8.010 | |
| SRR5643658 | five period of Gastrodia elata | 9.930 | |
| SRR5643659 | five period of Gastrodia elata | 6.990 | |
| SRR5643660 | five period of Gastrodia elata | 5.530 | |
| SRR5643661 | five period of Gastrodia elata | 7.050 | |
| SRR5643662 | five period of Gastrodia elata | 4.920 | |
| SRR5643663 | five period of Gastrodia elata | 6.010 | |
| SRR5643664 | five period of Gastrodia elata | 6.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.21 |
| Juven | Juvenile tuber | 6.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.94 | |
| Mother_Juven | Mother tuber of Juvenile | 8.14 |