Gene detail

Detail information of GWHGAAEX001124/evm.TU.scaffold_105.44

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|563697063\|ref\|YP_008869813.1\|	6.00E-14	RNP-1 like protein RNA-binding protein [candidate division WWE3 bacterium RAAC2_WWE3_1]
KOG	KOG0110	0	RNA-binding protein (RRM superfamily)
nr	gi\|743768030\|ref\|XP_010914288.1\|	0	PREDICTED: multiple RNA-binding domain-containing protein 1 [Elaeis guineensis]
Swissprot	tr\|Q9FXA2\|PABP8_ARATH	5.00E-14	Polyadenylate-binding protein 8
trEMBL	tr\|A0A061GD29\|A0A061GD29_THECC	0	Nucleotide binding,nucleic acid binding,RNA binding {ECO:0000313\|EMBL:EOY27481.1}
TAIR	AT4G19610	0	nucleotide binding;nucleic acid binding;RNA binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000105	2488017	2517509	-

Transcript Sequence
>GWHTAAEX001124 CATGAATTAGCTCAAGCCCTCGCCGAACGTTCTCTTCACGCAAAAACCCTAAATCACTTCTGTTCGTTGGATCGTTTTCTTCTTCACGGAGGCACAGACCACGGTTGTACCGAGACACCGAGGAAATCGACGGCCTTCTCTTCTCCACGGACCAGTTTAATTGTGCTCCCATTGGAATTTGTTTGGCTCTGCCCTTAGCTTGATGTCTCGACTATGTGTGAAGAATCTTCCAAGATATGTCAAAGAGGATCGACTGAGAGAATTTTTCTCTCAGAAGGGGGAGGTCACGGATGCAAAGCTCATGCGAACTATAGATGGAAAAAGCAGGCAGTTTGGTTTCATAGGGTTCCGTACCGATAGTGAAGCTGAGGAAGCTCTCAAATTCTTTAACAATACCTATATGGACACCTCCAGAATAACATGCGAGATTGCTCGAAGAGTTGGTGATCCAAACACACCTCGTCCATGGAGCCGTTATTCTGCAACTGCAAAGGAAAAAAGCTGCTTGAAAGAAAAAAACAAGGATTGCTCCATAAATTCTCCCCTTTCTAGTTCTAAAGGTCAAACGTCCACCAATGCCTTTGTAACAAATCTCAGAGGTTGCGAGCATAGTGATCCTAAGCTTAATGAGTTTCTTCAAATAATGCAGCCACGATCTAAAGCAAAATTGTGGGCAAATGATACAACATTCTCTATGAATTTTTTTGAGCAAGATGGAATACCTTTTGAGAAAGAATTGTGTCAGGGTAAGGTTAAGAAGGCATCTCAGTCTTCTGAATTTGATTTGGCTGATAAAAATTTTCCAAGGTCCTTAATTAAAGGATCTGCCAAAACAGATATATCTTCCGATGTTGCAAAAGATGATACATTGTCAGACATGGATTATCTAAAGAATCGGATCAAGGAAAACTGGTCAGATTCAGAAACAGATTATGTAGGTGATGAAATTGGGGATCATGATGGAGATGATAAAAAAGACAACATTTCACATATAGTTAAAAGTTATCAAATTCTCAAGTCTGAAGATGGACATGCCAGGGATGATCAGCTTGATGATGACAATGTTCCTTTTGAAGAAAATTTTGATGTTGCCAATATGGATAGCAAAAACCCAACAACATATGATGATGACAAAAGGCTTGTCCTTGACACTGGGCGTCTGTTCATTCGCAATCTTCCGTATACTACCAACGAGGATGAATTGCTTGAACTGTTTAGCCAATTTGGTGATGTTTCTGAGGTCCATCTTGTAACAGATAAGGATACAAAACGATCCAAAGGAATTGGTTATTTGCTTTACTCTCTTCCTGAGTCTGCAGCCAGGGCATTAGAAGCACTGGACAACTCCATTTTTCAGGGAAGATTATTACATGTCATGCCTGCAAAACTGCAATGCACAGATGATAAGAAACCAAGGTCTGAAACTGCTACTACTCAGAACAAGAAAAATCTTAAGCAACAAAAGGAAGAACAAAAGAAAGCATCTGAAGCTAGCGGAGATACACGTGCATGGAATAGTTTATTTATGCTTCAAGATACTATTGTTGAAAATATAGCAAGGAAACTTGGTGTTTGTAAAAGTGATTTTCTTGATCGAGAAGCAAATGATCTTGCGGTGAGGATTGCTATTGGGGAAACCCAAGTGGTTACTGAGACAAAAAAGGCTTTATCCAATGCTGGGGTTAATATTGCCACTTTGGAGGATTTTGCTTCCAAAACTACTAGCAATATGAAGAGAAGCAGCCATGTGTTACTGGCCAAGAATTTACCCTATAGTTCTACTGAAGGGGAACTTGCGAGCATGTTTGGAAAATTTGGAAGTTTGGACAAGATCATCCTTCCCCCAACTAAAGCATTGGCTGTGGTTATTTTCCTTGAGCCTACTGAAGCCCGTGCGGCATATAATGGTTTGGCATATAAAAGATACAAAGATGTTCCGTTATATTTGGAATGGGCTCCAGATGATATACTTCATCGTAGCTCCACCATAGAGGGATATGAGCCAAAAGACGCAGCTGGTGAGCAAAACTTGAAAAGTTTTATGCTGAAGCAAGCTATTGATGTTCTAGAGGAAGAAATTGATCCTGATAGAATTGAGTCCAGGTCCATTTTTGTGAAAAACTTGAATTTTAAGACTTCTGAACAGTCCTTGAAAGATCATTTTGGAAAGATTATGAAATTTGGTAGCATAAAGAGTGTCAAGGTGAAAAGGCACCTTAAAAATGGAAAGAACCTGTCCATGGGTTTTGGCTTCATTGAGTTTGATGCTGTGGAAACAGCAACAAATCTTTGCAGGGATGCGCAGGGAACTATCCTTGATGGGCATGCATTGATCTTGCAACTTTGTCATACCAAGACTGATGTTCATGATTTAAAGAAAGAAGGCAAAGATAAAAGTTTGACCAAACTGATTATAAGAAATGTAGCATTTGAAGCCACTGAAAAAGATCTAAGGCAGTTGTTAAGTTCATTTGGTCAGATTAAAAGCTTAAGGCTGCCCATGAAGTTCGGAAAGCACCGTGGCTTTGCATTTGTAGAGTATGTTACCAAGCAGGAGGCACAGAATGCTTTGCAGGCTCTTTCAAGCACCCATCTTTATGGGCGTCATCTGGTCCTAGAGAGAGCCAAGGAAGGAGAGAGCTTGGAAGAATTGAGAGAAAGGACTGCAGCTCAGTTTGTCGATGAACACAGTGGATTTCAGAAGCTGTCTAAAAAAAGGAGGAAATTGAACATTCTGGATGAAGGAAACGTGAAATTTTCAAAAATACTGGATTAATCCTTGTACGCAGTTTTGGGTTGGCTTATCTTTGTGATTCTTTGTAAATTAATGGTTATATAACATGCAGTTTGTGTTCTTTGGTATGCACATTTGTGATTGACAATGTGAATTTTAAGCTATCTGATGCAAATTTAATTAAGAATAATGTGCTTATTTTCTTTCAAGCAAGATTGATCATAATATGGAATTTGAGTTAGCCATTTTCCCC

Network for GWHGAAEX001124

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	4	72	1.60E-14
PF00076.21	RRM_1	320	390	1.60E-19
PF00076.21	RRM_1	520	577	4.40E-05
PF00076.21	RRM_1	636	710	7.30E-13
PF00076.21	RRM_1	736	803	1.40E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.300
SRP064423	SRR2545915	Juvenile tuber	67.670
SRP108465	SRR5643513	five period of Gastrodia elata	19.850
	SRR5643514	five period of Gastrodia elata	18.740
	SRR5643515	five period of Gastrodia elata	18.190
	SRR5643524	five period of Gastrodia elata	18.180
	SRR5643525	five period of Gastrodia elata	11.170
	SRR5643528	five period of Gastrodia elata	10.160
	SRR5643658	five period of Gastrodia elata	10.740
	SRR5643659	five period of Gastrodia elata	26.930
	SRR5643660	five period of Gastrodia elata	29.280
	SRR5643661	five period of Gastrodia elata	29.580
	SRR5643662	five period of Gastrodia elata	32.030
	SRR5643663	five period of Gastrodia elata	26.900
	SRR5643664	five period of Gastrodia elata	33.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.200
SRP279888	Gastro	Gastrodia elata tuber	48.86
	Juven	Juvenile tuber	32.10
	Mother_Gastro	Mother tuber of Gastrodia elata	19.31
	Mother_Juven	Mother tuber of Juvenile	27.52