Detail information of GWHGAAEX001127/evm.TU.scaffold_105.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|298291696|ref|YP_003693635.1| | 3.00E-95 | amidase [Starkeya novella DSM 506] |
| nr | gi|672178421|ref|XP_008809341.1| | 0 | PREDICTED: probable allantoate deiminase isoform X3 [Phoenix dactylifera] |
| Swissprot | tr|O49434|AAH_ARATH | 0 | Allantoate deiminase (Precursor) |
| trEMBL | tr|U5GU02|U5GU02_POPTR | 0 | Peptidase M20/M25/M40 family protein {ECO:0000313|EMBL:ERP65619.1} |
| TAIR | AT4G20070 | 0 | allantoate amidohydrolase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000105 | 2812193 | 2837798 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001127
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01546.27 | Peptidase_M20 | 153 | 511 | 3.40E-22 |
| PF07687.13 | M20_dimer | 293 | 409 | 1.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02083 | allC | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Purine metabolism | map00230 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016813 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
| GO:0016787 | Molecular Function | hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.720 |
| SRR2545915 | Juvenile tuber | 19.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.310 |
| SRR5643514 | five period of Gastrodia elata | 21.290 | |
| SRR5643515 | five period of Gastrodia elata | 18.780 | |
| SRR5643524 | five period of Gastrodia elata | 24.600 | |
| SRR5643525 | five period of Gastrodia elata | 22.590 | |
| SRR5643528 | five period of Gastrodia elata | 91.890 | |
| SRR5643658 | five period of Gastrodia elata | 35.170 | |
| SRR5643659 | five period of Gastrodia elata | 10.420 | |
| SRR5643660 | five period of Gastrodia elata | 15.770 | |
| SRR5643661 | five period of Gastrodia elata | 10.630 | |
| SRR5643662 | five period of Gastrodia elata | 12.500 | |
| SRR5643663 | five period of Gastrodia elata | 8.840 | |
| SRR5643664 | five period of Gastrodia elata | 6.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.77 |
| Juven | Juvenile tuber | 17.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.19 | |
| Mother_Juven | Mother tuber of Juvenile | 21.12 |