Detail information of GWHGAAEX001131/evm.TU.scaffold_105.59


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|338733967|ref|YP_004672440.1|7.00E-21hypothetical protein SNE_A20720 [Simkania negevensis Z]
KOGKOG28048.00E-144Phosphorylcholine transferase/cholinephosphate cytidylyltransferase
nrgi|672180923|ref|XP_008810667.1|1.98E-166PREDICTED: choline-phosphate cytidylyltransferase 2-like isoform X3 [Phoenix dactylifera]
Swissprottr|F4JJE0|CCT2_ARATH6.00E-148Choline-phosphate cytidylyltransferase 2
trEMBLtr|J3LA11|J3LA11_ORYBR2.00E-162Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G14780.1}
TAIRAT2G322608.00E-144phosphorylcholine cytidylyltransferase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010529823083003240+
Transcript Sequence

Network for GWHGAAEX001131

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01467.25CTP_transf_like201498.80E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00968PCYT1 Metabolic pathways map01100
Glycerophospholipid metabolismmap00564
Phosphonate and phosphinate metabolismmap00440

Gene Ontology

GO term OntologyName
GO:0009058Biological Processbiosynthetic process
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms69.000
SRR2545915Juvenile tuber72.620
SRP108465SRR5643513five period of Gastrodia elata80.870
SRR5643514five period of Gastrodia elata61.860
SRR5643515five period of Gastrodia elata87.260
SRR5643524five period of Gastrodia elata65.820
SRR5643525five period of Gastrodia elata113.310
SRR5643528five period of Gastrodia elata98.020
SRR5643658five period of Gastrodia elata84.610
SRR5643659five period of Gastrodia elata76.180
SRR5643660five period of Gastrodia elata69.350
SRR5643661five period of Gastrodia elata74.970
SRR5643662five period of Gastrodia elata78.660
SRR5643663five period of Gastrodia elata85.640
SRR5643664five period of Gastrodia elata60.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_157.520
SRR6049655Rhizomagastrodiae_C368-T10_good_145.810
SRR6049656Rhizomagastrodiae_C368-T07_good_160.790
SRR6049657Rhizomagastrodiae_C368-T07_good_150.530
SRR6049658Rhizomagastrodiae_C368-T04_good_159.490
SRR6049659Rhizomagastrodiae_C368-T04_good_150.400
SRR6049660Rhizomagastrodiae_C368-T01_good_145.630
SRR6049661Rhizomagastrodiae_C368-T04_good_151.800
SRR6049662Rhizomagastrodiae_C368-T01_good_161.600
SRR6049663Rhizomagastrodiae_C368-T01_good_159.290
SRR6049664Rhizomagastrodiae_C368-T10_good_172.640
SRR6049665Rhizomagastrodiae_C368-T10_good_172.640
SRP279888GastroGastrodia elata tuber 63.63
JuvenJuvenile tuber46.65
Mother_GastroMother tuber of Gastrodia elata 69.90
Mother_JuvenMother tuber of Juvenile 78.24