Detail information of GWHGAAEX001134/evm.TU.scaffold_105.63


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG33303.00E-117Transport protein particle (TRAPP) complex subunit
nrgi|565361856|ref|XP_006347669.1|1.07E-124PREDICTED: trafficking protein particle complex subunit 3-like [Solanum tuberosum]
trEMBLtr|M1A3D2|M1A3D2_SOLTU4.00E-125Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400013824}
TAIRAT5G547503.00E-117Transport protein particle (TRAPP) component

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010531464203169504-
Transcript Sequence

Network for GWHGAAEX001134

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04051.15TRAPP241703.40E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0048193Biological ProcessGolgi vesicle transport
GO:0030008Cellular ComponentTRAPP complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms32.430
SRR2545915Juvenile tuber35.790
SRP108465SRR5643513five period of Gastrodia elata46.220
SRR5643514five period of Gastrodia elata50.340
SRR5643515five period of Gastrodia elata52.040
SRR5643524five period of Gastrodia elata53.220
SRR5643525five period of Gastrodia elata42.550
SRR5643528five period of Gastrodia elata40.320
SRR5643658five period of Gastrodia elata39.150
SRR5643659five period of Gastrodia elata46.040
SRR5643660five period of Gastrodia elata45.610
SRR5643661five period of Gastrodia elata50.950
SRR5643662five period of Gastrodia elata45.110
SRR5643663five period of Gastrodia elata45.970
SRR5643664five period of Gastrodia elata46.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.510
SRR6049655Rhizomagastrodiae_C368-T10_good_157.490
SRR6049656Rhizomagastrodiae_C368-T07_good_143.190
SRR6049657Rhizomagastrodiae_C368-T07_good_138.000
SRR6049658Rhizomagastrodiae_C368-T04_good_139.830
SRR6049659Rhizomagastrodiae_C368-T04_good_137.920
SRR6049660Rhizomagastrodiae_C368-T01_good_143.990
SRR6049661Rhizomagastrodiae_C368-T04_good_138.630
SRR6049662Rhizomagastrodiae_C368-T01_good_153.060
SRR6049663Rhizomagastrodiae_C368-T01_good_145.910
SRR6049664Rhizomagastrodiae_C368-T10_good_153.670
SRR6049665Rhizomagastrodiae_C368-T10_good_153.670
SRP279888GastroGastrodia elata tuber 49.05
JuvenJuvenile tuber47.67
Mother_GastroMother tuber of Gastrodia elata 36.03
Mother_JuvenMother tuber of Juvenile 34.84