Detail information of GWHGAAEX001137/evm.TU.scaffold_105.69


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|338741626|ref|YP_004678588.1|1.00E-106porphobilinogen deaminase [Hyphomicrobium sp. MC1]
KOGKOG28928.00E-176Porphobilinogen deaminase
nrgi|743855829|ref|XP_010941629.1|0PREDICTED: porphobilinogen deaminase, chloroplastic-like [Elaeis guineensis]
Swissprottr|Q43082|HEM3_PEA0Porphobilinogen deaminase, chloroplastic (Precursor)
trEMBLtr|M0TVU4|M0TVU4_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P33420_001}
TAIRAT5G082808.00E-176hydroxymethylbilane synthase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010533373613361822-
Transcript Sequence

Network for GWHGAAEX001137

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01379.19Porphobil_deam632747.60E-73
PF03900.14Porphobil_deamC2873592.10E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01749hemC, HMBS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0033014Biological Processtetrapyrrole biosynthetic process
GO:0018160Biological Processpeptidyl-pyrromethane cofactor linkage
GO:0004418Molecular Functionhydroxymethylbilane synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.380
SRR2545915Juvenile tuber28.260
SRP108465SRR5643513five period of Gastrodia elata29.770
SRR5643514five period of Gastrodia elata35.480
SRR5643515five period of Gastrodia elata31.240
SRR5643524five period of Gastrodia elata34.100
SRR5643525five period of Gastrodia elata23.620
SRR5643528five period of Gastrodia elata37.920
SRR5643658five period of Gastrodia elata31.880
SRR5643659five period of Gastrodia elata19.950
SRR5643660five period of Gastrodia elata21.010
SRR5643661five period of Gastrodia elata18.430
SRR5643662five period of Gastrodia elata27.430
SRR5643663five period of Gastrodia elata27.600
SRR5643664five period of Gastrodia elata25.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.270
SRR6049655Rhizomagastrodiae_C368-T10_good_157.730
SRR6049656Rhizomagastrodiae_C368-T07_good_138.370
SRR6049657Rhizomagastrodiae_C368-T07_good_137.320
SRR6049658Rhizomagastrodiae_C368-T04_good_131.390
SRR6049659Rhizomagastrodiae_C368-T04_good_129.890
SRR6049660Rhizomagastrodiae_C368-T01_good_132.610
SRR6049661Rhizomagastrodiae_C368-T04_good_128.080
SRR6049662Rhizomagastrodiae_C368-T01_good_135.340
SRR6049663Rhizomagastrodiae_C368-T01_good_132.880
SRR6049664Rhizomagastrodiae_C368-T10_good_144.790
SRR6049665Rhizomagastrodiae_C368-T10_good_144.790
SRP279888GastroGastrodia elata tuber 36.24
JuvenJuvenile tuber52.12
Mother_GastroMother tuber of Gastrodia elata 39.15
Mother_JuvenMother tuber of Juvenile 57.07