Detail information of GWHGAAEX001151/evm.TU.scaffold_106.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|146298365|ref|YP_001192956.1|3.00E-40two component regulator [Flavobacterium johnsoniae UW101]
KOGKOG06190FOG: Leucine rich repeat
nrgi|695066108|ref|XP_009379932.1|0PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SPE8|CLV2_ARATH0Leucine-rich repeat receptor-like protein CLAVATA2 (Precursor)
trEMBLtr|D7SPS6|D7SPS6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI17655.3}
TAIRAT1G653800Leucine-rich repeat (LRR) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000107406928409737+
Transcript Sequence

Network for GWHGAAEX001151

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.11LRRNT_232690.00021
PF13855.5LRR_81001559.90E-08
PF13855.5LRR_83193748.40E-10
PF13855.5LRR_84114701.40E-07
PF13855.5LRR_85676073.70E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.340
SRR2545915Juvenile tuber3.430
SRP108465SRR5643513five period of Gastrodia elata6.470
SRR5643514five period of Gastrodia elata4.680
SRR5643515five period of Gastrodia elata5.480
SRR5643524five period of Gastrodia elata4.880
SRR5643525five period of Gastrodia elata7.080
SRR5643528five period of Gastrodia elata5.860
SRR5643658five period of Gastrodia elata6.690
SRR5643659five period of Gastrodia elata7.230
SRR5643660five period of Gastrodia elata6.630
SRR5643661five period of Gastrodia elata8.180
SRR5643662five period of Gastrodia elata8.890
SRR5643663five period of Gastrodia elata7.440
SRR5643664five period of Gastrodia elata7.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.270
SRR6049655Rhizomagastrodiae_C368-T10_good_16.570
SRR6049656Rhizomagastrodiae_C368-T07_good_15.630
SRR6049657Rhizomagastrodiae_C368-T07_good_15.160
SRR6049658Rhizomagastrodiae_C368-T04_good_16.360
SRR6049659Rhizomagastrodiae_C368-T04_good_16.800
SRR6049660Rhizomagastrodiae_C368-T01_good_14.290
SRR6049661Rhizomagastrodiae_C368-T04_good_15.380
SRR6049662Rhizomagastrodiae_C368-T01_good_16.810
SRR6049663Rhizomagastrodiae_C368-T01_good_15.940
SRR6049664Rhizomagastrodiae_C368-T10_good_15.420
SRR6049665Rhizomagastrodiae_C368-T10_good_15.420
SRP279888GastroGastrodia elata tuber 6.97
JuvenJuvenile tuber5.99
Mother_GastroMother tuber of Gastrodia elata 10.22
Mother_JuvenMother tuber of Juvenile 11.58