Detail information of GWHGAAEX001151/evm.TU.scaffold_106.5
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
COG | gi|146298365|ref|YP_001192956.1| | 3.00E-40 | two component regulator [Flavobacterium johnsoniae UW101] |
KOG | KOG0619 | 0 | FOG: Leucine rich repeat |
nr | gi|695066108|ref|XP_009379932.1| | 0 | PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Musa acuminata subsp. malaccensis] |
Swissprot | tr|Q9SPE8|CLV2_ARATH | 0 | Leucine-rich repeat receptor-like protein CLAVATA2 (Precursor) |
trEMBL | tr|D7SPS6|D7SPS6_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI17655.3} |
TAIR | AT1G65380 | 0 | Leucine-rich repeat (LRR) family protein |
Location And Transcript Sequence
Scaffold | Start | End | Strand |
---|---|---|---|
GWHAAEX00000107 | 406928 | 409737 | + |
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Transcript Sequence | |||
Network for GWHGAAEX001151
Network category | Network | Top300 PCC genelist |
---|---|---|
Coexpression Positive | Network | Top300 PCC genelist |
Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
Module ID | Function Annotation |
---|
Protein Structure
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
PF08263.11 | LRRNT_2 | 32 | 69 | 0.00021 |
PF13855.5 | LRR_8 | 100 | 155 | 9.90E-08 |
PF13855.5 | LRR_8 | 319 | 374 | 8.40E-10 |
PF13855.5 | LRR_8 | 411 | 470 | 1.40E-07 |
PF13855.5 | LRR_8 | 567 | 607 | 3.70E-08 |
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Protein Sequence |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | pathway | mapID |
---|---|---|---|
-- | -- | -- | -- |
Gene Ontology
GO term | Ontology | Name |
---|---|---|
GO:0005515 | Molecular Function | protein binding |
Expression pattern
SRP | Sample | Description | FPKM |
---|---|---|---|
SRP064423 | SRR2545914 | vegetative propagation corms | 3.340 |
SRR2545915 | Juvenile tuber | 3.430 | |
SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.470 |
SRR5643514 | five period of Gastrodia elata | 4.680 | |
SRR5643515 | five period of Gastrodia elata | 5.480 | |
SRR5643524 | five period of Gastrodia elata | 4.880 | |
SRR5643525 | five period of Gastrodia elata | 7.080 | |
SRR5643528 | five period of Gastrodia elata | 5.860 | |
SRR5643658 | five period of Gastrodia elata | 6.690 | |
SRR5643659 | five period of Gastrodia elata | 7.230 | |
SRR5643660 | five period of Gastrodia elata | 6.630 | |
SRR5643661 | five period of Gastrodia elata | 8.180 | |
SRR5643662 | five period of Gastrodia elata | 8.890 | |
SRR5643663 | five period of Gastrodia elata | 7.440 | |
SRR5643664 | five period of Gastrodia elata | 7.250 | |
SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.270 |
SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.570 | |
SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.630 | |
SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.160 | |
SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.360 | |
SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.800 | |
SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.290 | |
SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.380 | |
SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.810 | |
SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.940 | |
SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.420 | |
SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.420 | |
SRP279888 | Gastro | Gastrodia elata tuber | 6.97 |
Juven | Juvenile tuber | 5.99 | |
Mother_Gastro | Mother tuber of Gastrodia elata | 10.22 | |
Mother_Juven | Mother tuber of Juvenile | 11.58 |