Gene detail

Detail information of GWHGAAEX001153/evm.TU.scaffold_106.9

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0700	4.00E-163	Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase
nr	gi\|672115486\|ref\|XP_008780893.1\|	0	PREDICTED: probable protein phosphatase 2C 78 [Phoenix dactylifera]
Swissprot	tr\|Q2QN36\|P2C78_ORYSJ	1.00E-180	Probable protein phosphatase 2C 78
trEMBL	tr\|F6H674\|F6H674_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47716.1}
TAIR	AT4G33920	4.00E-163	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000107	510507	517829	-

Transcript Sequence
>GWHTAAEX001153 TCAAAGAAAAGCTAACCGGAATCTCTTCCTACCTCTCCTTCTTCGTCGGATTTTACCTTTTGACGTTTTTTTTCTACTTCCCAACGCGTTGTTTTGACTGCGGGCGCCGAGTCACCTCCCACCATTAGATCCCTTTCTTCCTCACTCCCGTTTGGCGACGATTCCGCCAAGCAGAGGAAACATAGATAGGAAGAGGGAGGAAAGCCGAGGATCGGGATGGATCAATCCTTCTGTTGCTGGCCGATATGGCGCTTTTGCGGGAGGCGCAGGGCCGCCGCAAGCTGCTATGGAGACGGCCTGCTGTGGCACATGGATCTCAAGCCACACGCTTCCGGGGAGTTTTCCATTGCCGCGGCTCAGGCGAACACATCGCTTGAAGACCAAGGCCAAGTCCTCACCTCCCCTTTGGGAACCTGCGTCGGGGTCTTCGACGGCCATGGCGGCCCGGAGGCTTCCCGATTTGTCAACACCCACATCTTCGGGCACCTCCAAAAGTTTGCTTCGGAGCAAGGGGGTTTATCTGCGCATGTTATGAGGAAGGCGTTTGCTGCGACAGAGGACGAGTTTCTTCATCTGGTTAAGCAGTCGTGGCTTTCGACGCCTCAGATTGCGTCGGTGGGATCCTGCTGCCTTGTGGGAGCGATCACGAGCGATGTGATCTATGTGGCCAATTTGGGGGACTCGAGGGCGGTGCTTGGCCGGCGGGCGGCTAACGGGAGGTCGGTGATGGCGGAGAGGCTCTCGAGCGATCACAACGTTGCTGTGGAGGAGGTCAGGAAAGAGCTCACAGAGATGCATCCGGATGACTCTCACATTGTTGTATATACCAGAGGGGTGTGGCGGATTAAAGGGATCATACAGGTATCGAGATCCATTGGAGACGTGTACTTGAAGAAGCCTGATTTCTATAGGGATCCTCTGTTCCAGCAAACTGTCTGCCCCATCCCTCTGAAAAGGCCCGTCATGACGGCCGAACCCACAATTCAAGTTCACCACCGCATGCCGAACGACTCCTTTGTGATCTTTGCGTCAGATGGCCTTTGGGAGCAGCTCAACGATGAAGACGCTGTCCAATTAGTCTTTAAGCATCCCAGAGCAGGCATTGCCAAGAGATTGGTGAAAGCTGCCCTCAGCACGGCTGCAAAGAAGAGGGAGATGAGGTATGAAGAAATCAGGAAGATTGACCAGGGTATAAGGCGGCACTTCCACGACGACATCACTGTCATAGTGGTGTACCTAGATCACGGCCGTCGCAATCCATCGTCAATGCCTGATATCAGCGGCACCACCAACATGCCCATTGACATCTTCTCCGCGAACTCCGCCGGTGCTGACGTGTCCTGAGAAGCCGAATCGGCGGAGCTTTTTCGGTTGTGAGTACAGATCATATATGCCCATCAGCACAGATTAGTTTCGGAGGTGGGGTTTGACTATCTGATTGAGAGCGCTCGATCGGGTGATGACGATCTGCGGGTGTACAGACCTGGCTAAGGTTTTGATAGATACTTGATTCTTCTCAGAAGAGAGGGCAACAGGTTGGTCTATTGTATATAGTGTAGAGGTATATTTGTTCTTAATACCAAAATAAAGCCTGAGTAGTTCTGCATATACAATCATATTCAAGCAGGTAACAAAAAATTGATACAAAAAGGCCTAAATTACATGCTAAAATACAACAAGTGCTTGAATGCTAAATATTCAGCACCCAAATTTTAACATTTACAAATAAAG

Network for GWHGAAEX001153

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	67	310	1.20E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.810
SRP064423	SRR2545915	Juvenile tuber	4.100
SRP108465	SRR5643513	five period of Gastrodia elata	5.060
	SRR5643514	five period of Gastrodia elata	4.780
	SRR5643515	five period of Gastrodia elata	7.790
	SRR5643524	five period of Gastrodia elata	5.120
	SRR5643525	five period of Gastrodia elata	14.350
	SRR5643528	five period of Gastrodia elata	10.440
	SRR5643658	five period of Gastrodia elata	9.660
	SRR5643659	five period of Gastrodia elata	4.980
	SRR5643660	five period of Gastrodia elata	3.930
	SRR5643661	five period of Gastrodia elata	5.640
	SRR5643662	five period of Gastrodia elata	7.430
	SRR5643663	five period of Gastrodia elata	5.600
	SRR5643664	five period of Gastrodia elata	9.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.160
SRP279888	Gastro	Gastrodia elata tuber	5.05
	Juven	Juvenile tuber	5.32
	Mother_Gastro	Mother tuber of Gastrodia elata	13.41
	Mother_Juven	Mother tuber of Juvenile	10.87