Gene detail

Detail information of GWHGAAEX001157/evm.TU.scaffold_106.21

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672198321\|ref\|XP_008777297.1\|	PREDICTED: BTB/POZ domain-containing protein NPY4-like [Phoenix dactylifera]
Swissprot	tr\|O80970\|NPY2_ARATH	BTB/POZ domain-containing protein NPY2
trEMBL	tr\|M0S7N4\|M0S7N4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P13430_001}
TAIR	AT2G14820	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000107	1450478	1466358	-

Transcript Sequence
>GWHTAAEX001157 GAAGCAATAAAGAAACAATAAATGGCATAATAAAAAGCAGAGAAAGTGGAAAGAACAAAGGAGAAAAAAAGACTGACAGGGAACATAATAGGTGTGACTATGGAGGGCGCATAATGGGGTCTCTTTGCTTCTTCTTATAAAGAGGAGATGTGACTTTGGAAGTTAATTGAAGAATGTGAATGTTGGGGTTTGAGCCTTTGAAATATTCTTGAGAGTTGGAGATCTTTTAAAATTTCATTTTTTATGAAAGAAAAATACTGAACACATGGGAGTAATGCTTACGGTGGCAGCTTAGTGCTTGTGGCTGTCGCCCTTAATGTTATTAGTATTGTTCACAGTCTTCCTTCTGACTTCATATCTTCCGTTATTTGACAAGATAAAAGTTGAAGGGGCTTTTACTTTCTCCTCTTCCACCTCTTCTTCTTTTGCATCCTTGAATCTTTGAATTAAGTTGAGCAGTTCGCACATTCATGCACCATCTTCATTAGCTCTTATCATAGAGTTGAAAGAAAAAGTGAGCTTTGATTTGAGAAGATGAAGTTTATGAAGCTTGGCTCGAAGCCGGATACTTTCCAAACAGATTGCAATGACATAAAATTTGTAGCTAATGAGTTGGCAAGTGACATCATAGTTAAAGTGGGTGATGTGAAGTTCTTTTTACACAAGTTCCCCCTCTTATCAAAGAGCAGCCATTTGCAGAAGCTGGTGGCTGCTACTAATAATGAGGAAAACATTGACGAGATCCTCATCCCTGACATTCCTGGCGGACCCTCTTCCTTTGAAATATGCGCCAAGTTCTGCTACGGCATGGTTGTCACCCTCAACGCTCACAACGTCGCCACCGTCCGCTGCGCCGCAGAATTCCTTGAAATGCACGAGACGGTGGAAAAAGGGAATCTCGTCTACAAGATCGAAGTCTTTCTGAGCACCGGTGTCTTCCGGGCTTGGAGAGACTCCATTATCGTCCTTCAGAGCACCAAGCCTCTCCTACCGTGGTCAGAGGACTTGAAGCTAGTGAGCCACTGCATAGACTCAATAGCTTCAAAGGCTTGCTCGGATGCTTCCAAGGTTGGCTGGTCATATTCCTACAGCCAGAAGAGATTCTCGCCTGAAAATCGGCAGCAGTGCGCACCGCCGAAGGACTGGTGGATCGAGGATCTGTGCGAGCTCGATTTAGATTTGTATTCGAGGGTCTTATCGACCATCAAAGCGAGGGAGAGAGTGTCCGAGGAGGTGATAGGAGAGGCGCTGAGAGTTTACGCCTACAGAAAGCTTCCGGGATTCGGCAAAGGCAATGTGGCTGAAAGGGGGAATACTTTGAGAAGCGAGGCCATCTTGGAGGCTATCGTTGGGCTTTTGCCGCCCAAGAAAGGCTCCGTTTCATGCAGTTTTTTGCTCAAACTGCTTGGGAATGCAAGGAAGCTGCACAGCAGTGAGGTTATTAAGAGAGATCTTGTGAAGAAGGTAGTGATTCAGTTGGAGGAAGCGCATGTTTCGGATCTCTTATTTCCTGTTCTTGGAGGGGAAAACACAGTGTATGATGTTGAAATGGTGCTTAGCATAGTGAGGGAGTTTGCTGTGATTGAGAGAAAGAATCCTGATCTTGTTTTATGTAGAACAAAGATAGCAGTTGGGAGATTGGTTGATGGGTTTCTGGCAATGATTGCAAAGGATCATAGTCTCTCCTTGTCAAAATTTACTGAGTTGGCTAATTTGGTGTCAGCTGAATCAAGGCCTGTGCATGATGAACTCTACAATGCTATTGATTTATATCTCAAGGAGCACCAAGATCTCAGCAAGAGTGAGAGAAAGAAGCTATGCAGCCTCATGGATTGCAGAAAGCTCTCTGTGGATGCCAGCGCTCATGCTGTTCAGAACGAGAGCCTTCCTCTGCGAGTCATTGTTCAGGTCCTCTTCTTTGAACAGCTAAGAGTGGCAGCTCAGGCCCCAGAGCTTGGGAGTGGCTCTAATGGAAGCCTGCAATCCGTCATAAGTGAGGAAAACTTGGTCGAAGAGAAGGGAATTGGCAGAGTGAAGGCTGTTCCGATGCCTAAGAAAATGCTTGGGAAGCTTCTTTCAAGCAAAGGGCGAGGCAGCGGCTCTGATACCACTGGAAGTCCAGAGTTGGGAAGGCCAGAAGAGCCCAAGTCCACGCCTCCGAGAATTGGAAGGCATTCTGTCTCTTAGTAGAGTTGCTTACATTGTAGATTCATAAAGAAAGAGTCTTTGGTAGGTAGATTGTAAAGAAGAAGGCGAATGCATTCTTCTATGTTTATGGCATGGTTTATGAAGCTTCTTCTGTCATATGTTGTATAATCAGCCACTTGAGCTTTTTGTAGCTTTATGATTCAGTTCTTGCTTTCTCTGGAATGAAAGTCCCTACTTTTGTTAAAGCAGCTTGCTGAATGTCTTTTAGGTATTACGAGTGTATTTCTATGTAATTAATATATCAC

Network for GWHGAAEX001157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.30	BTB	25	118	1.20E-08
PF03000.13	NPH3	203	442	4.00E-78

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.330
SRP064423	SRR2545915	Juvenile tuber	6.830
SRP108465	SRR5643513	five period of Gastrodia elata	6.340
	SRR5643514	five period of Gastrodia elata	21.720
	SRR5643515	five period of Gastrodia elata	6.730
	SRR5643524	five period of Gastrodia elata	18.400
	SRR5643525	five period of Gastrodia elata	21.230
	SRR5643528	five period of Gastrodia elata	5.160
	SRR5643658	five period of Gastrodia elata	28.600
	SRR5643659	five period of Gastrodia elata	6.100
	SRR5643660	five period of Gastrodia elata	4.420
	SRR5643661	five period of Gastrodia elata	3.680
	SRR5643662	five period of Gastrodia elata	4.210
	SRR5643663	five period of Gastrodia elata	4.920
	SRR5643664	five period of Gastrodia elata	4.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.670
SRP279888	Gastro	Gastrodia elata tuber	12.12
	Juven	Juvenile tuber	6.60
	Mother_Gastro	Mother tuber of Gastrodia elata	2.53
	Mother_Juven	Mother tuber of Juvenile	1.21