Detail information of GWHGAAEX001160/evm.TU.scaffold_106.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG06562.00E-57G1/S-specific cyclin D
nrgi|743847083|ref|XP_010939010.1|9.29E-102PREDICTED: cyclin-D2-1-like isoform X2 [Elaeis guineensis]
Swissprottr|P42751|CCD11_ARATH6.00E-58Cyclin-D1-1
trEMBLtr|A0A067LJP7|A0A067LJP7_JATCU4.00E-87Uncharacterized protein {ECO:0000313|EMBL:KDP44519.1}
TAIRAT1G702102.00E-57CYCLIN D1;1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010718277241830724-
Transcript Sequence

Network for GWHGAAEX001160

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.22Cyclin_N121411.80E-26
PF02984.18Cyclin_C1442285.10E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.610
SRR2545915Juvenile tuber0.630
SRP108465SRR5643513five period of Gastrodia elata1.750
SRR5643514five period of Gastrodia elata2.930
SRR5643515five period of Gastrodia elata1.040
SRR5643524five period of Gastrodia elata1.630
SRR5643525five period of Gastrodia elata0.360
SRR5643528five period of Gastrodia elata15.260
SRR5643658five period of Gastrodia elata1.050
SRR5643659five period of Gastrodia elata2.260
SRR5643660five period of Gastrodia elata2.740
SRR5643661five period of Gastrodia elata2.020
SRR5643662five period of Gastrodia elata0.470
SRR5643663five period of Gastrodia elata0.690
SRR5643664five period of Gastrodia elata0.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.650
SRR6049655Rhizomagastrodiae_C368-T10_good_17.350
SRR6049656Rhizomagastrodiae_C368-T07_good_13.810
SRR6049657Rhizomagastrodiae_C368-T07_good_12.450
SRR6049658Rhizomagastrodiae_C368-T04_good_12.580
SRR6049659Rhizomagastrodiae_C368-T04_good_11.260
SRR6049660Rhizomagastrodiae_C368-T01_good_12.130
SRR6049661Rhizomagastrodiae_C368-T04_good_13.090
SRR6049662Rhizomagastrodiae_C368-T01_good_15.070
SRR6049663Rhizomagastrodiae_C368-T01_good_12.360
SRR6049664Rhizomagastrodiae_C368-T10_good_13.060
SRR6049665Rhizomagastrodiae_C368-T10_good_13.060
SRP279888GastroGastrodia elata tuber 0.26
JuvenJuvenile tuber0.99
Mother_GastroMother tuber of Gastrodia elata 10.51
Mother_JuvenMother tuber of Juvenile 11.54