Detail information of GWHGAAEX001161/evm.TU.scaffold_106.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0748 | 4.00E-85 | Predicted membrane proteins, contain hemolysin III domain |
| nr | gi|743860924|ref|XP_010943141.1| | 9.91E-121 | PREDICTED: heptahelical transmembrane protein 4-like [Elaeis guineensis] |
| Swissprot | tr|Q10PI5|ADPO3_ORYSJ | 1.00E-86 | Heptahelical transmembrane protein ADIPOR3 |
| trEMBL | tr|W5BL70|W5BL70_WHEAT | 7.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_2BS_75916275A.2} (Fragment) |
| TAIR | AT5G20270 | 4.00E-85 | heptahelical transmembrane protein1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000107 | 1849554 | 1851078 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001161
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03006.19 | HlyIII | 72 | 290 | 6.50E-64 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07297 | ADIPOR | AMPK signaling pathway | map04152 |
| Adipocytokine signaling pathway | map04920 | ||
| Longevity regulating pathway | map04211 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.260 |
| SRR2545915 | Juvenile tuber | 1.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.280 |
| SRR5643514 | five period of Gastrodia elata | 12.220 | |
| SRR5643515 | five period of Gastrodia elata | 4.530 | |
| SRR5643524 | five period of Gastrodia elata | 10.060 | |
| SRR5643525 | five period of Gastrodia elata | 2.300 | |
| SRR5643528 | five period of Gastrodia elata | 0.860 | |
| SRR5643658 | five period of Gastrodia elata | 0.250 | |
| SRR5643659 | five period of Gastrodia elata | 1.130 | |
| SRR5643660 | five period of Gastrodia elata | 0.990 | |
| SRR5643661 | five period of Gastrodia elata | 0.830 | |
| SRR5643662 | five period of Gastrodia elata | 0.880 | |
| SRR5643663 | five period of Gastrodia elata | 0.400 | |
| SRR5643664 | five period of Gastrodia elata | 1.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.19 |
| Juven | Juvenile tuber | 0.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.35 | |
| Mother_Juven | Mother tuber of Juvenile | 3.80 |