Detail information of GWHGAAEX001165/evm.TU.scaffold_106.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338733713|ref|YP_004672186.1| | 4.00E-71 | ribosomal RNA large subunit methyltransferase N 2 [Simkania negevensis Z] |
| nr | gi|743859628|ref|XP_010942797.1| | 0 | PREDICTED: uncharacterized protein LOC105060692 isoform X1 [Elaeis guineensis] |
| trEMBL | tr|W9S8P3|W9S8P3_9ROSA | 0 | Ribosomal RNA large subunit methyltransferase N 1 {ECO:0000313|EMBL:EXC31471.1} |
| TAIR | AT3G19630 | 1.00E-175 | Radical SAM superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000107 | 2282958 | 2306603 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001165
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04055.20 | Radical_SAM | 120 | 277 | 5.40E-13 |
| PF13394.5 | Fer4_14 | 124 | 213 | 3.70E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006364 | Biological Process | rRNA processing |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
| GO:0008173 | Molecular Function | RNA methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.800 |
| SRR2545915 | Juvenile tuber | 13.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.150 |
| SRR5643514 | five period of Gastrodia elata | 15.340 | |
| SRR5643515 | five period of Gastrodia elata | 14.470 | |
| SRR5643524 | five period of Gastrodia elata | 15.240 | |
| SRR5643525 | five period of Gastrodia elata | 17.950 | |
| SRR5643528 | five period of Gastrodia elata | 17.100 | |
| SRR5643658 | five period of Gastrodia elata | 18.720 | |
| SRR5643659 | five period of Gastrodia elata | 10.860 | |
| SRR5643660 | five period of Gastrodia elata | 11.360 | |
| SRR5643661 | five period of Gastrodia elata | 12.780 | |
| SRR5643662 | five period of Gastrodia elata | 12.640 | |
| SRR5643663 | five period of Gastrodia elata | 11.050 | |
| SRR5643664 | five period of Gastrodia elata | 11.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.69 |
| Juven | Juvenile tuber | 12.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.76 | |
| Mother_Juven | Mother tuber of Juvenile | 15.46 |