Detail information of GWHGAAEX001166/evm.TU.scaffold_106.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|288931263|ref|YP_003435323.1|8.00E-129thermosome [Ferroglobus placidus DSM 10642]
KOGKOG03640Chaperonin complex component, TCP-1 gamma subunit (CCT3)
nrgi|743758181|ref|XP_010925482.1|0PREDICTED: T-complex protein 1 subunit gamma-like [Elaeis guineensis]
Swissprottr|Q84WV1|TCPG_ARATH0T-complex protein 1 subunit gamma {ECO:0000303|PubMed:11599560}
trEMBLtr|M0T9H7|M0T9H7_MUSAM0T-complex protein 1 subunit gamma {ECO:0000256|RuleBase:RU004191}
TAIRAT5G263600TCP-1/cpn60 chaperonin family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010723973592419870+
Transcript Sequence

Network for GWHGAAEX001166

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00118.23Cpn60_TCP1545478.50E-165
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006457Biological Processprotein folding
GO:0005524Molecular FunctionATP binding
GO:0051082Molecular Functionunfolded protein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms123.880
SRR2545915Juvenile tuber133.600
SRP108465SRR5643513five period of Gastrodia elata106.210
SRR5643514five period of Gastrodia elata123.120
SRR5643515five period of Gastrodia elata103.300
SRR5643524five period of Gastrodia elata120.570
SRR5643525five period of Gastrodia elata61.050
SRR5643528five period of Gastrodia elata82.850
SRR5643658five period of Gastrodia elata57.160
SRR5643659five period of Gastrodia elata133.010
SRR5643660five period of Gastrodia elata147.850
SRR5643661five period of Gastrodia elata144.130
SRR5643662five period of Gastrodia elata152.730
SRR5643663five period of Gastrodia elata148.820
SRR5643664five period of Gastrodia elata141.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1115.830
SRR6049655Rhizomagastrodiae_C368-T10_good_1130.740
SRR6049656Rhizomagastrodiae_C368-T07_good_1112.420
SRR6049657Rhizomagastrodiae_C368-T07_good_1104.990
SRR6049658Rhizomagastrodiae_C368-T04_good_199.580
SRR6049659Rhizomagastrodiae_C368-T04_good_195.090
SRR6049660Rhizomagastrodiae_C368-T01_good_1107.470
SRR6049661Rhizomagastrodiae_C368-T04_good_1103.720
SRR6049662Rhizomagastrodiae_C368-T01_good_1144.470
SRR6049663Rhizomagastrodiae_C368-T01_good_1123.190
SRR6049664Rhizomagastrodiae_C368-T10_good_1154.180
SRR6049665Rhizomagastrodiae_C368-T10_good_1154.180
SRP279888GastroGastrodia elata tuber 213.32
JuvenJuvenile tuber254.83
Mother_GastroMother tuber of Gastrodia elata 101.39
Mother_JuvenMother tuber of Juvenile 191.42