Gene detail

Detail information of GWHGAAEX001173/evm.TU.scaffold_106.48

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1922	1.00E-166	Rho GTPase effector BNI1 and related formins
nr	gi\|743859704\|ref\|XP_010942818.1\|	0	PREDICTED: LOW QUALITY PROTEIN: formin-like protein 8 [Elaeis guineensis]
Swissprot	tr\|Q10Q99\|FH8_ORYSJ	0	Formin-like protein 8 (Precursor)
trEMBL	tr\|M1BXN4\|M1BXN4_SOLTU	0	Formin-like protein {ECO:0000256\|RuleBase:RU361260}
TAIR	AT5G67470	1.00E-166	formin homolog 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000107	2849949	2861542	+

Transcript Sequence
>GWHTAAEX001173 ATGGGAAGGATCCCATGTCTTAGGTTTTCTTCTACACGCGATTGTGAAAAAAATGAAAAGAATAAAAGACGCCTGCGATTGATTGTAAAGGGGTGGAATGACAGGAAAGCAGCGCAGCGCCTGCTCATCATAACAAAATCAAGATTCTCCCGCCACGTCCCCTCGCCGGGACGACACATCTTCGCCGGAGCAATGCCTTTAAGCAGCAACTATGGTGCCTCCTCTCGTCACGCAATCAACGGAAACGGAATCCAAATATTGCTCCCGATTGAAGCTTCCTTTCCCTCATCACTCTCGCCTCCACTCATCGCCTTGACTGCCCTCCTCAGAAACTCCATGGCACCCTTTTTGCTCCTCCTCTTCTCCCTCTCCGTTGCAGCCGAAGGCAGCCCCGGCGGAGGAAGGAGAGTTCTTCACGAACCCCTTTACCCCATCCAATGGACTCCTCCGCCTCCGCCATCCCCTTCAGACGAAGCTTACCCTTTGCCGGAATCCCCTAATCCGCCGTTGCCCTCCTCTCACACGCGTCACTCAATCTCCGGTTCCACTAAAATCGTCATTACAGTTTCTGTCACCGTCTTCGCTGCGATTATTCTTTCCCTCTCCGCTTACTTTCTGTGCCACCGGAGAACGAAAAGCCAGCCGGAAACACGAAAGCTCATTGGCGATTCTCGACAGTTTGCGGCTCCTGATGATCGTCCTGTCACCACCACGGACTTGCTCTATCTGGGAACGATGGAGCCTAGCTTTCCCGCAGCCCAAAGATTGAGAGCTGAATCGAACGGCTCTGCGTATTGGAAAGGCGCTTCGGAGTTTGATCGGGTCATGGAGATGCGTCATCCCAGTCCAGAGCTTCAGCCGCTTCCACCGCTTCGCCAACATCTTCCTCCTCCGCCGCCACCTCCACCAATGGCGTCGATGAATGCTTCCTCCGACGATGACACATATTACACGCCGAAGCGCTCCGTGGCTTCGAGAAATAGTGAGAGCCCCGGAAGCCCTAGATCTCGGCTGAGCCAACCATCTTCCATGAAGGAGGTTCCTCGCTCTCGGAGATCCTCTCCAAGGATGCAGATATCTGACCCTAATCTTCGTACACCTCCCCCTCCTCCACCGTCTCCGCCTCCGCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCATCCGCCTCCGCCTCCGCATCCGCCTCCGCCTCCGCCTCCGCCTCCTTCGCATCCGCCTCCGCCTCCACCGCCCCCTCCGAAGACCGATAAGATAACAAAATTGCAACCGCCGTCGATTCAGCGTCATAAGGGTTTTAGCAGAACAGTTAGCGAATTGAATGAAGCTTCTCTTCCTTCCAGGCGTCAGCTTTTGAGGCCATTGCCGCAGTCCATTAATGATCGGTTTGTCAATGGCGGCGGTTGTTCGTCTTCTAATCCAGTTACTGATGAAGGAGGCGATTTAGAAAGCGAAGAAAAGCCTAAGCTGAAGCCACTGCTTTGGGATAAGGTTCGGGCGAGCTCGGATCGGGAAATGGTTTGGGACCAGCTCAAGTCTGATTCATTTCAGTTGAATGAAGATATGATTGAAACTCTGTTTGCTAATAATTCGGTCGCTCCTTCACAAAAAGAACAGAGCAAGAGAGCGCCGATCCTTCCGCAGTTGAAGCAAGAAGAGACGGTTCTTGATCCAAAGAAATCCCAGAATATTGCAATACTTTTGCGAGCACTGAATGTCACAAGAGAGGAAGTATCTGAAGCACTCTTAGATGGGAACATGGAAGGCCTGGGAGTTGAGCTTTTTGAGACGCTAGTCAAAATGGCACCCACAAAGGAAGAGGAGCTGAAGCTTAGGGACTACAATGGCGACGCATCCAAGCTGGGACCTGCGGAGCGGTTCCTGAAGGCTCTTCTAGAGATACCCTTCGCCTTCAGAAGAGTCGATGCGCTGCGTTACAGGGCGAATTTCGAAACAGAAGTCAAGTATCTGAGGACAGCTTTTGGAACCCTTGAGGCAGCCTGCGAAGATCTGAGAAGCAGCAGGCTGTTTCTGAAGCTGCTGGAGGCGGTTCTGAGAACGGGAAATCGCATGAACGTGGGAACGAACCGCGGGGAGGCCAAAGCCTTCAGACTCGACACTTTGCTTAAGCTGGCAGATGTGAAAGGCTCCGACGGAAAGACCACAGTCCTGCATTTCGTCGTTCAGGAGATGGTGCGCTCGGAGGGATCGCCGGCCTCCGCAGGCGCCGAGCTCAAGAAGAAGGCCCTCAGCGTTGTCTCCGGTTTGAGTTCCGAGCTCGGCAATGTCAAGAAGGCTGCTGGGATGGACTCTGACGTCCTCAGTGGCTACCTCTCCAAGCTCGATCTCGGGCATCAGAACCTCGCCTCATTCCTGCAGCTCGGAGATCATCGCGATCTCGATCGCAGCTTCTTCGCCAGCATGACGGCCTTTCTCCGTGAAGGAGAGACCGAGATCCGCAGCCTCAAGTCCGAGGAGAAGGCGGCCATGCTCAGAGTCAGGGACCTCGCTGCCTACTTCCATGGCGACGTGCCCAAGGAGGAAGCTCACCCTCTGAGGATCTTTATGGTGGTGAGAGACTTCCTGACCATTCTCGATCATGTCTGCAGCGACGTGGGGAAGTCTCACGAGAGGGTAGTGATGGGCTCTGCCCCGTCCGCTCTCCATAGATTCCCGCCAAATCGAAATGCAGGAAATTCTGATGGGCACGATGATTAA

Network for GWHGAAEX001173

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02181.22	FH2	494	875	3.70E-113

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.100
SRP064423	SRR2545915	Juvenile tuber	6.990
SRP108465	SRR5643513	five period of Gastrodia elata	9.450
	SRR5643514	five period of Gastrodia elata	11.510
	SRR5643515	five period of Gastrodia elata	9.700
	SRR5643524	five period of Gastrodia elata	8.810
	SRR5643525	five period of Gastrodia elata	25.870
	SRR5643528	five period of Gastrodia elata	18.890
	SRR5643658	five period of Gastrodia elata	20.380
	SRR5643659	five period of Gastrodia elata	9.610
	SRR5643660	five period of Gastrodia elata	9.040
	SRR5643661	five period of Gastrodia elata	10.750
	SRR5643662	five period of Gastrodia elata	8.610
	SRR5643663	five period of Gastrodia elata	9.230
	SRR5643664	five period of Gastrodia elata	8.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.070
SRP279888	Gastro	Gastrodia elata tuber	7.62
	Juven	Juvenile tuber	13.79
	Mother_Gastro	Mother tuber of Gastrodia elata	8.10
	Mother_Juven	Mother tuber of Juvenile	9.09