Gene detail

Detail information of GWHGAAEX001177/evm.TU.scaffold_106.52

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|430743587\|ref\|YP_007202716.1\|	1.00E-15	WD40 repeat-containing protein [Singulisphaera acidiphila DSM 18658]
KOG	KOG1036	0	Mitotic spindle checkpoint protein BUB3, WD repeat superfamily
nr	gi\|657980456\|ref\|XP_008382226.1\|	0	PREDICTED: mitotic checkpoint protein BUB3.2 [Malus domestica]
Swissprot	tr\|Q9LJN8\|BUB31_ARATH	0	Mitotic checkpoint protein BUB3.1
trEMBL	tr\|A0A061E084\|A0A061E084_THECC	0	Transducin/WD40 repeat-like superfamily protein {ECO:0000313\|EMBL:EOX98459.1}
TAIR	AT1G49910	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000107	2992752	3015397	-

Transcript Sequence
>GWHTAAEX001177 TTTAAATACAAAATGGCGTGCACCAGCGACGCCGGCAGGCCCGCGGTTTGTTTTTTACGCACGGATCGAAACGCGACGCCGGCGGGCGGACACCCTGAAACCATTTCAAATTCTAGGATCGGTCGAAGTCCCTCCCCGAAACCATTGCCTTGAACAACGCGCCTTTCTCATCCTATCTTCGTGACATAAACCCTAATCCGCCATTCATTACCTCCGTCCGCCATTCATTACCTCCGTCCGCCATGAGCGGAGCTCCTCCTAGCAATGGGAGGGAGCTCGCCCAACCTCCCTTAGACGGCATCTCGAATCTACGCTTCTCCAACCACAGCGATCACCTTCTCGTCTCTTCCTGGGACAAGAGTGTTCGTCTCTATGATGCTAGTGCTGACGCTCTCAAGGGTAAATTTATGCACGGTGGACCCGTTCTAGACTGCTGCTTCCACGACGACTCTTCTGGTTTCACTGCTTGCGCGGATAACAAGGTCCGAAGGTTTGTCTTTAGCACTGCCAAAGAGGATATTTTGGGACGGCATGATGCCCCAGTACGCTGCATTGAGTATTCATATACAGCAGGTCAAGTGATTACCGGTAGTTGGGACAAAACATTAAAGTGTTGGGATCCTAGAGGTGCAAGTGGGCCAGAACATACTCTAGTTGGAACATACCCACAACCTGAGCGGGTGTATTCACTTTCTTTAGTTGGTCATCGCCTTGTAGTAGCTACTGCAGGTAGGCATGTAAATGTCTATGATTTACGAAATATGTCGCAACCTGAACAGCGGCGAGAGTCATCCTTGAAATATCAAACAAGATGTGTCAGATGCTATCCAAACGGAACAGGCTTTGCTCTCAGTTCTGTGGAGGGTAGAGTCGCCATGGAGTTCTTTGACTTGTCAGAGGCAAGCCAATCTAAGAAGTATGCATTCAAGTGCCACCGTAAGTCAGAGGCCGGAAGAGACACCATCTATCCCGTTAACTCCATTGCATTCCACCCCATTTATGGGACGTTTGCCACTGGAGGCTGTGACGGCTATGTCAATGTCTGGGATGGCAACAATAAGAAGAGGCTCTATCAGTACTCAAAATACCCTTCTAGCATTGCTGCGTTATCCTTCAGTAAAGATGGCCGCCTGCTGGCAGTCGCGTCCAGTTACACCTATGAAGAGGGAGACATACCTCATGACCCTGACACTGTCTTCATTCGAAATATTAATGAAGTGGAGGTGAAGCCAAAGCCTAAAGCTCTTCCTGCTGCAGCCCCTATATAATATTCTATAGAATGTATGCCATTTCTCTCTCTCTGAGCTTCATAGCCACCCTTTGGACTTATTTGTGCTGCATTATATTTAGAGCTAAATTCGGATCAAATTCAATGTTTGGGAATTGAATCAGGCCATTGATAGTTTAGGGTTTAATTCATCATTTAATCTGGCAAAATTTTACTTGCAAGACTCATGAACTAGAAACAAAATGAAACTCCTATTTTCTATTTGCTGCATTTGGGGCTTCTATAATGTTTGTAATGCTCCTTTTCTCATTGGGCTTCTTCTTCCCAATAAAAGGGTTTCTTTTATGATTTTCTTAGAAATGAATATTTTCAGATGAACAAAACTCACTATCTCATCTTCAGTTCTCACTACATTGTGTCTACATTTTAATTCTTA

Network for GWHGAAEX001177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	19	45	0.031
PF00400.31	WD40	95	126	0.0021
PF00400.31	WD40	228	269	0.0029

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K02180	BUB3	Cell cycle	map04110
K02180	BUB3	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.070
SRP064423	SRR2545915	Juvenile tuber	36.700
SRP108465	SRR5643513	five period of Gastrodia elata	56.150
	SRR5643514	five period of Gastrodia elata	58.060
	SRR5643515	five period of Gastrodia elata	52.800
	SRR5643524	five period of Gastrodia elata	53.840
	SRR5643525	five period of Gastrodia elata	36.760
	SRR5643528	five period of Gastrodia elata	33.370
	SRR5643658	five period of Gastrodia elata	34.640
	SRR5643659	five period of Gastrodia elata	53.810
	SRR5643660	five period of Gastrodia elata	58.780
	SRR5643661	five period of Gastrodia elata	61.820
	SRR5643662	five period of Gastrodia elata	57.020
	SRR5643663	five period of Gastrodia elata	56.320
	SRR5643664	five period of Gastrodia elata	58.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	60.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	56.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	69.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	69.730
SRP279888	Gastro	Gastrodia elata tuber	60.43
	Juven	Juvenile tuber	76.29
	Mother_Gastro	Mother tuber of Gastrodia elata	32.69
	Mother_Juven	Mother tuber of Juvenile	43.45