Gene detail

Detail information of GWHGAAEX001179/evm.TU.scaffold_106.58

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|29349093\|ref\|NP_812596.1\|	4.00E-104	hypothetical protein BT_3685 [Bacteroides thetaiotaomicron VPI-5482]
nr	gi\|743859581\|ref\|XP_010942785.1\|	0	PREDICTED: uncharacterized protein LOC105060684 isoform X2 [Elaeis guineensis]
trEMBL	tr\|F6HSS7\|F6HSS7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57737.1}
TAIR	AT5G67540	0	Arabinanase/levansucrase/invertase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000107	3194423	3201217	+

Transcript Sequence
>GWHTAAEX001179 GTCAAAAATACAAAATTAGTGACAATAATTTTCTTTATAGCATAAGTAATATAACAATAGTAAGAATGTCAATTTGGATAAAAAGGACAAGGATGTTCCAGCAATAGAGAGAAGACTCGAAGATTTTAAGAGCAAGGAAAGCGCGCTGCAAGCAAGCCGACCGCATCTCAAAAAATGATGCATAAATTTGCTTATAGCATTTTTTTCTATCAGTGATGCAAGAAGAGGCCCTTACCTGCTTTTGCGGTAGGAGATTCCCTCCCATCATCAAATCACCAAACATGCGCAATAAAGACGGGATGAACGCTGCGGGGAATGGAAAGGGTATATTAATTGATCTAAAGCGATAAGGGAAATCTCTGCTCTTCTCGATATGGCGGACGCAGGGAGATCGTTGCCTTTTCTATCAGGATGAGGACCAAAAACAGGAAATCATCCACTTTCCATTGCAATGCAGGGAGCAGATTCTCATTGCCAATTGCTCTTTGGAGCATCGTGGGATGCATTCTCATGCTTCATTTCATCTCTATGGCCAATCAAAAGGACGAGGAGAACCGTGTCAGATTGAGCAACCTTCGATTTATCCAGGAATTAGAGGCGGTCGAAGAAGAGGACTTCCACCTTCCCGCTCCGCGCGGTAAGAGGAATCCTCGTGCTCTTAAAAGAAGGGGGCCGAGAAAGCAGCACACTGTAATTGACGAGTATCTGGATGAGTCTTCTGAATTGAGGCCGTATTTCTTCCCTGATCGGAAGTCGGCCATTGGCCCGACACGAGGAAGTAGTGAGCTCAAGCATTTCCATCCAGGAAAGTTGTGGTTGGACACCGACGGACGCCCGATTCAAGCTCATGGAGGTGGAATTTTGTTTGATGAGAGAACGGAGACTTACTATTGGTATGGAGAGAACAAAGATGGGCCAACTTACCTTTCTCATTCTAAAGGAGCTGCAAGGGTGGACATAATCGGCGTCAGCTGCTACTCTTCAAAGGACCTATGGACATGGAAGAACGAGGGGATAGTCCTACCCGCAGAAACCACAAATGCCACTCACGATCTCCACCCCTCCAACGTGCTCGAGCGGCCTAAAGTCATCTACAACGACAGAACCAGCAAATACGTCATGTGGATGCACATCGACGACGCCAATTACACCAAGGCTTCGATCGGCGTGGCCTTCAGCAGCTCCCCCGTCGGCCCTTTCGAGTACCTCTACAGCAAACGGCCCCACGACTGCGACAGCCGTGACATGACTCTCTTCAAAGACGAAGACGGGAGGGCGTACCTTGTCTACTCTTCGGGCGACAACAGCGAGCTTCACGTGAGCCCATTGACGAACGACTACCTCGACGTCTCCGGCCAGATGCGAAGGATTCTCGTCGGCCAGCACAGGGAGGCGCCCGCCATGTTCAAGTACAGAGGAACGTACTACATGATCACCTCGGGATGCAGCGGGTGGGCGCCGAACAGGGCGATGGCTCATGCGGCGGAGACGGTGATGGGGATCTGGGAGACCATGGGAAACCCTTGCGTGGGAGGTAACAAGATTCTCAGAATCACCACTTTCTTTGCGCAGGCCGCCTTCGTGGTCCCTCTCAGGGAACATCCGGGCCTCTTCGTCTTCATGGCGGATCGCTGGAATCCTTCCTATCTCAGCGATTCCAGGTACGTCTGGCTTCCTCTCACCGTCGGCGGAGTCTCCGACGAACCCTCCGAGCTCAATTTTGGATTCCCTCTTTGGGCCAAGGTCTCCGTCTTCTGGCATCGAAGTTGGGCGCTCCCTGCTCCGCCCTATTTATAGCGCTTCTTGCCGGGTCTTATCGGGTCCCGCCGTTTTCTCAGCCACCCGGTAACGCACTCGATTTATTCTGTAAAATTTTAAAAAATTGAATAATTAATCACCGCTTAGTGTAAAAGGGGAATTTATTATTCTATGGGTGAGCTTCAGGGTTTCTGAAGTTGCATGTAACAACTCTCTTAGTCTTAATAAATGATATTGTAACCCAAAGTAAGTATTTTGATTATGCAATAATCTAAAGTATATTTCCAT

Network for GWHGAAEX001179

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04616.13	Glyco_hydro_43	172	366	1.20E-17

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH43
Carbohydrate-Active enzymes Family	GH43

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.180
SRP064423	SRR2545915	Juvenile tuber	18.790
SRP108465	SRR5643513	five period of Gastrodia elata	47.460
	SRR5643514	five period of Gastrodia elata	43.680
	SRR5643515	five period of Gastrodia elata	43.280
	SRR5643524	five period of Gastrodia elata	44.590
	SRR5643525	five period of Gastrodia elata	84.250
	SRR5643528	five period of Gastrodia elata	61.600
	SRR5643658	five period of Gastrodia elata	95.300
	SRR5643659	five period of Gastrodia elata	47.450
	SRR5643660	five period of Gastrodia elata	48.280
	SRR5643661	five period of Gastrodia elata	51.330
	SRR5643662	five period of Gastrodia elata	50.460
	SRR5643663	five period of Gastrodia elata	45.760
	SRR5643664	five period of Gastrodia elata	47.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	49.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.210
SRP279888	Gastro	Gastrodia elata tuber	36.94
	Juven	Juvenile tuber	40.23
	Mother_Gastro	Mother tuber of Gastrodia elata	45.77
	Mother_Juven	Mother tuber of Juvenile	38.85