Gene detail

Detail information of GWHGAAEX001183/evm.TU.scaffold_106.63

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428311367\|ref\|YP_007122344.1\|	5.00E-112	geranylgeranyl pyrophosphate synthase [Microcoleus sp. PCC 7113]
KOG	KOG0776	4.00E-145	Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
nr	gi\|685360395\|ref\|XP_009114700.1\|	2.64E-147	PREDICTED: geranylgeranyl pyrophosphate synthase 7, chloroplastic [Brassica rapa]
Swissprot	tr\|Q9ZU77\|GGPP7_ARATH	1.00E-145	Geranylgeranyl pyrophosphate synthase 7, chloroplastic (Precursor)
trEMBL	tr\|M4EH31\|M4EH31_BRARP	1.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Bra028096.1-P}
TAIR	AT2G18620	4.00E-145	Terpenoid synthases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000107	3511184	3513681	+

Transcript Sequence
>GWHTAAEX001183 ATGAATTTTTGTCGCGAGGCGCATATGAAATTTCTCTCCGATCTCTTTCCTTCCATACCGTATGGGACGTGTTCGTTCTGTACTAAAAGCAAAACATAAAAAAATAATAATTATTTTTAAAAATAAAAATTAGAAAAACATATTTTAATTTGTGCGTATTGTATTTCCCATTTTTGTCATCGGTATTTGTTTATTCTATAGCCAACAATTATTACGTGTCTGTATTTTATTGGCTCAAGTTTGCTGTACGCTATGTTCTCTAGCATACCAAAATCCACTAGCTCTCAAGCTGTCATCCACTTGAGCTGATATATTTAGTATTTTAAAATTAATAAATTTTTTAAATATCTAAATTTATCTATTTTAATATTTTTATTTAATATTAAGTATTAATATAGTTTTTTAAAAAGAATTAGAGTTTATTTTTTTATTATTTTGGACAGTCGGTGAAACATTTAAGAAAATAAAAAAATAATTGAAAAAAAAGGGGAATAATGCTGTTGGACCGTGCGCTTTGGATTTATCTTTATATAAAGAAGCTATAGGACAGTGCTATAATTTCTTTCTTGAAAAAGTAATTTGTTCAAAAATAAATTAATAAAAAATTTTCAAATTTTTTTTCTTAAGATATCAGTATTCTTAAATTATCTTATTTTTCCCAAAAGATATGCTTTTTGGTTATTTAATAATTTGTGCAGAAAAAAGCGATATTTTCAGTCTGGAGAACCTTCTTCGTAAGTGAGAAAGGTCATTTCATTCATTCCACCCTCACTATTTTAATCCCACATCTCCAAATCTCTTAATAAACCTCCCATTTAATGATGGCTTCCATCACCCTTTTCCCCATTTGCTGCCACTCCTTCCGCATTCATCGGCGATCCACCACTACTTCGGCGTTGAAATCTGCCATGCCGGCGATCATCCACCAAATTCCCGGCGATGACTCCGGGTTCGACTTCAGCTCGTACATGGCCTCCAAAACCTCCGCCGTGAACACCGCCCTTGATCGCGCCGTTCCGCCGCTCGCGTACCCGGCTCGAATCCACGAGGCCATGCGCTACTCCCTCCTGGCCGGCGGCAAGCGCATTCGGCCCGCCCTTTGCATCGCCGCCTGCGAGCTCGTCGGCGGAGACGAGGCCGCGGCGATGCCCGCTGCCTGCGCCGCGGAGATGATCCACACCATGTCCCTCATCCACGACGATCTCCCGTGCATGGACGATGGCGACTTCCGGCGAGGCCAGCCGACGTCCCACGTCGTGTACGGCGAGTCGCTCGCCGTTCTCGCAGGCGACGCGCTCCTCGCGCTCGCCTTCGGCCACCTCGCCACGGCGCCCTGCGGCCACCCTTCCCGCACTGTGCGGGCAGTGGCAGAGCTCGCCCGCTGCGTTGGCACGGAGGGGCTGGTCGCTGGGCAGGTGGTCGACCTCGCTTCCGCCGGCGGCGGCCCTGTCGGCCTTGAGACGCTCGAGTACATACACCTGCATAAGACGGCGGCGCTCCTGGAGGCGGCGGCAGTGATGGGAGCCATTGTCGGCGGCGGGTCAGAGGAGGAGGTGGACAGGCTGAGGCGATATGCCCGCTGCGTGGGGCTGCTGTTCCAGGTGGTGGACGACATTTTGGACGTGACGGGGTTGACGGAAGAACTGGGAAAGACTGCGGGTAAGGATCTGGCCAGCGAGAAGGCGACGTATCCGAGGCTGCTCGGGCTGGAGAGGTCGAGGGAAATCGCCGGCGAGCTGCTCAGGGATGCCGGGCTCCAGCTTCAGGAATTCGACCGGGCCAAGGCCGCCCCGCTGCTCTCTCTCGCAGACTACATCGCCTTCAGGCAAAATTAGGAGGGAGTGCGAGTTGTGTTAAGTGGGAGAAATTCCTATTTCATGGGTCTTGATGATGGATTTAGACAAGGCTATTTCTTGTCACCTCCTTGATGATGCTGGGCTTGGCCAAGCAATAAGATTCGTAAATCGGAGCTTTCTGCTATTGCCCCCTTCTGTTTGCCGATGACATTTTGCTTTTTGGAGATGCATCGGTCGAAAGCATTTTCGATGAATCTGGTCTTTAGTTGCAATCACGACAAATCGGTATTAACACTTCATCGGTGTATCATCAATTTTGTTTGCATGGAATCCAATCGAAAAAACATCCCACTTTCTTTCGTGAAACTCTATTGCCACTTTCATAGAGAAAGGCAAATTCTCTAATAACTGAAGTTTCCTTATGTGGGATAACATTATAGCTTAGATTGTGTAACAATGGAGACTTAAGAGACGATTAAATAGACAATTGAGACCTAGCACCCGAGGTTCATATCGCATTATACCAGCCTGACTCTGACTCGGCCTAGGATGACCCAATGACAGGTGAAAACCGTAGGATCATTGAATTAATGAAACTTAATCTCCTTTGTGGAATTGGCTTGAGTCCCATGTAGGGCTAGCAATTTGACTCGGAACTTGAAATTTGAACTCGATTCGACTCAAACTCGAGACATTTTAACC

Network for GWHGAAEX001183

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00348.16	polyprenyl_synt	74	303	8.90E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13789	GGPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	Biological Process	isoprenoid biosynthetic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.960
SRP064423	SRR2545915	Juvenile tuber	19.010
SRP108465	SRR5643513	five period of Gastrodia elata	52.400
	SRR5643514	five period of Gastrodia elata	68.130
	SRR5643515	five period of Gastrodia elata	54.460
	SRR5643524	five period of Gastrodia elata	62.500
	SRR5643525	five period of Gastrodia elata	48.220
	SRR5643528	five period of Gastrodia elata	41.500
	SRR5643658	five period of Gastrodia elata	34.060
	SRR5643659	five period of Gastrodia elata	125.940
	SRR5643660	five period of Gastrodia elata	126.480
	SRR5643661	five period of Gastrodia elata	124.540
	SRR5643662	five period of Gastrodia elata	147.090
	SRR5643663	five period of Gastrodia elata	152.530
	SRR5643664	five period of Gastrodia elata	131.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	61.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	56.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	67.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	59.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	68.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	61.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	82.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	80.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	76.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	76.300
SRP279888	Gastro	Gastrodia elata tuber	75.16
	Juven	Juvenile tuber	42.97
	Mother_Gastro	Mother tuber of Gastrodia elata	51.32
	Mother_Juven	Mother tuber of Juvenile	23.26