Detail information of GWHGAAEX001185/evm.TU.scaffold_107.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479131984|ref|YP_005071944.1| | 3.00E-41 | cyclic nucleotide-binding protein [Arthrospira platensis NIES-39] |
| KOG | KOG0498 | 1.00E-168 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain |
| nr | gi|695026444|ref|XP_009400519.1| | 0 | PREDICTED: potassium channel KAT4-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P92960|KAT3_ARATH | 3.00E-169 | Potassium channel KAT3 |
| trEMBL | tr|M0SX56|M0SX56_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09770_001} |
| TAIR | AT4G32650 | 1.00E-168 | potassium channel in Arabidopsis thaliana 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000106 | 8893 | 95358 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001185
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00520.30 | Ion_trans | 33 | 277 | 1.20E-25 |
| PF00027.28 | cNMP_binding | 368 | 451 | 1.80E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006813 | Biological Process | potassium ion transport |
| GO:0006811 | Biological Process | ion transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005216 | Molecular Function | ion channel activity |
| GO:0005249 | Molecular Function | voltage-gated potassium channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.270 |
| SRR2545915 | Juvenile tuber | 0.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.250 |
| SRR5643514 | five period of Gastrodia elata | 4.650 | |
| SRR5643515 | five period of Gastrodia elata | 2.300 | |
| SRR5643524 | five period of Gastrodia elata | 3.350 | |
| SRR5643525 | five period of Gastrodia elata | 0.150 | |
| SRR5643528 | five period of Gastrodia elata | 0.120 | |
| SRR5643658 | five period of Gastrodia elata | 0.090 | |
| SRR5643659 | five period of Gastrodia elata | 0.030 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.03 |
| Juven | Juvenile tuber | 0.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.41 | |
| Mother_Juven | Mother tuber of Juvenile | 0.46 |