Detail information of GWHGAAEX001186/evm.TU.scaffold_107.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2085 | 0 | Serine/threonine protein phosphatase 2A, regulatory subunit |
| nr | gi|672182673|ref|XP_008811587.1| | 0 | PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Phoenix dactylifera] |
| Swissprot | tr|Q93YV6|2A5I_ARATH | 0 | Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform |
| trEMBL | tr|K3Z5M1|K3Z5M1_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si021839m} |
| TAIR | AT5G25510 | 0 | Protein phosphatase 2A regulatory B subunit family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000106 | 165868 | 192529 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001186
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01603.19 | B56 | 105 | 512 | 3.00E-174 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007165 | Biological Process | signal transduction |
| GO:0019888 | Molecular Function | protein phosphatase regulator activity |
| GO:0000159 | Cellular Component | protein phosphatase type 2A complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 57.560 |
| SRR2545915 | Juvenile tuber | 45.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.410 |
| SRR5643514 | five period of Gastrodia elata | 35.350 | |
| SRR5643515 | five period of Gastrodia elata | 35.450 | |
| SRR5643524 | five period of Gastrodia elata | 35.280 | |
| SRR5643525 | five period of Gastrodia elata | 28.570 | |
| SRR5643528 | five period of Gastrodia elata | 27.000 | |
| SRR5643658 | five period of Gastrodia elata | 34.940 | |
| SRR5643659 | five period of Gastrodia elata | 28.540 | |
| SRR5643660 | five period of Gastrodia elata | 27.440 | |
| SRR5643661 | five period of Gastrodia elata | 26.240 | |
| SRR5643662 | five period of Gastrodia elata | 28.030 | |
| SRR5643663 | five period of Gastrodia elata | 26.400 | |
| SRR5643664 | five period of Gastrodia elata | 24.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.71 |
| Juven | Juvenile tuber | 34.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.71 | |
| Mother_Juven | Mother tuber of Juvenile | 30.63 |