Detail information of GWHGAAEX001190/evm.TU.scaffold_107.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|256822615|ref|YP_003146578.1|2.00E-11ribonuclease D [Kangiella koreensis DSM 16069]
KOGKOG24052.00E-126Predicted 3'-5' exonuclease
nrgi|672156409|ref|XP_008797901.1|0PREDICTED: uncharacterized protein LOC103712959 [Phoenix dactylifera]
trEMBLtr|A0A067GMR3|A0A067GMR3_CITSI1.00E-178Uncharacterized protein {ECO:0000313|EMBL:KDO79975.1}
TAIRAT2G259102.00E-1263'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000106678380735350-
Transcript Sequence

Network for GWHGAAEX001190

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01612.19DNA_pol_A_exo1392192.60E-23
PF00013.28KH_12723301.50E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006139Biological Processnucleobase-containing compound metabolic process
GO:0003723Molecular FunctionRNA binding
GO:0003676Molecular Functionnucleic acid binding
GO:0008408Molecular Function3'-5' exonuclease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms160.710
SRR2545915Juvenile tuber140.380
SRP108465SRR5643513five period of Gastrodia elata61.130
SRR5643514five period of Gastrodia elata89.230
SRR5643515five period of Gastrodia elata84.030
SRR5643524five period of Gastrodia elata91.800
SRR5643525five period of Gastrodia elata80.940
SRR5643528five period of Gastrodia elata84.700
SRR5643658five period of Gastrodia elata78.840
SRR5643659five period of Gastrodia elata82.090
SRR5643660five period of Gastrodia elata88.390
SRR5643661five period of Gastrodia elata86.840
SRR5643662five period of Gastrodia elata109.360
SRR5643663five period of Gastrodia elata101.920
SRR5643664five period of Gastrodia elata110.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_176.710
SRR6049655Rhizomagastrodiae_C368-T10_good_155.380
SRR6049656Rhizomagastrodiae_C368-T07_good_177.970
SRR6049657Rhizomagastrodiae_C368-T07_good_188.440
SRR6049658Rhizomagastrodiae_C368-T04_good_194.400
SRR6049659Rhizomagastrodiae_C368-T04_good_1114.770
SRR6049660Rhizomagastrodiae_C368-T01_good_177.790
SRR6049661Rhizomagastrodiae_C368-T04_good_185.160
SRR6049662Rhizomagastrodiae_C368-T01_good_187.740
SRR6049663Rhizomagastrodiae_C368-T01_good_188.100
SRR6049664Rhizomagastrodiae_C368-T10_good_1110.990
SRR6049665Rhizomagastrodiae_C368-T10_good_1110.990
SRP279888GastroGastrodia elata tuber 128.63
JuvenJuvenile tuber47.67
Mother_GastroMother tuber of Gastrodia elata 79.70
Mother_JuvenMother tuber of Juvenile 57.50