Detail information of GWHGAAEX001191/evm.TU.scaffold_107.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389878478|ref|YP_006372043.1| | 4.00E-27 | 50S ribosomal protein L24 [Tistrella mobilis KA081020-065] |
| KOG | KOG1708 | 2.00E-23 | Mitochondrial/chloroplast ribosomal protein L24 |
| nr | gi|672172869|ref|XP_008806544.1| | 4.67E-97 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|A6MW12|RK24_RHDSA | 1.00E-15 | 50S ribosomal protein L24, chloroplastic |
| trEMBL | tr|G2XMG1|G2XMG1_ORYBR | 3.00E-95 | Hypothetical_protein {ECO:0000313|EMBL:CBX25352.1} |
| TAIR | HSM13375699 | 2.00E-23 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000106 | 809546 | 821188 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001191
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00467.28 | KOW | 17 | 48 | 3.80E-08 |
| PF17136.3 | ribosomal_L24 | 51 | 112 | 1.30E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02895 | RP-L24, MRPL24, rplX | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.780 |
| SRR2545915 | Juvenile tuber | 21.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 46.400 |
| SRR5643514 | five period of Gastrodia elata | 52.880 | |
| SRR5643515 | five period of Gastrodia elata | 46.790 | |
| SRR5643524 | five period of Gastrodia elata | 47.530 | |
| SRR5643525 | five period of Gastrodia elata | 25.650 | |
| SRR5643528 | five period of Gastrodia elata | 20.220 | |
| SRR5643658 | five period of Gastrodia elata | 21.670 | |
| SRR5643659 | five period of Gastrodia elata | 40.110 | |
| SRR5643660 | five period of Gastrodia elata | 41.900 | |
| SRR5643661 | five period of Gastrodia elata | 52.170 | |
| SRR5643662 | five period of Gastrodia elata | 34.140 | |
| SRR5643663 | five period of Gastrodia elata | 38.050 | |
| SRR5643664 | five period of Gastrodia elata | 32.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 44.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 28.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 24.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 57.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 57.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.54 |
| Juven | Juvenile tuber | 18.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.09 | |
| Mother_Juven | Mother tuber of Juvenile | 11.84 |