Detail information of GWHGAAEX001194/evm.TU.scaffold_107.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427738339|ref|YP_007057883.1|1.00E-14WD40 repeat-containing protein [Rivularia sp. PCC 7116]
KOGKOG06493.00E-111WD40 repeat protein
nrgi|695054703|ref|XP_009415491.1|5.50E-173PREDICTED: THO complex subunit 6 [Musa acuminata subsp. malaccensis]
Swissprottr|Q8L4M1|THOC6_ARATH1.00E-130THO complex subunit 6
trEMBLtr|M0TTE8|M0TTE8_MUSAM5.00E-163Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P24950_001}
TAIRAT2G194303.00E-111DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000106874942954015-
Transcript Sequence

Network for GWHGAAEX001194

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402112452.40E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K13175THOC6 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.670
SRR2545915Juvenile tuber26.400
SRP108465SRR5643513five period of Gastrodia elata22.230
SRR5643514five period of Gastrodia elata22.250
SRR5643515five period of Gastrodia elata19.260
SRR5643524five period of Gastrodia elata21.450
SRR5643525five period of Gastrodia elata7.880
SRR5643528five period of Gastrodia elata4.280
SRR5643658five period of Gastrodia elata4.540
SRR5643659five period of Gastrodia elata16.510
SRR5643660five period of Gastrodia elata19.380
SRR5643661five period of Gastrodia elata18.730
SRR5643662five period of Gastrodia elata18.180
SRR5643663five period of Gastrodia elata19.900
SRR5643664five period of Gastrodia elata19.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.300
SRR6049655Rhizomagastrodiae_C368-T10_good_122.100
SRR6049656Rhizomagastrodiae_C368-T07_good_118.800
SRR6049657Rhizomagastrodiae_C368-T07_good_117.260
SRR6049658Rhizomagastrodiae_C368-T04_good_112.880
SRR6049659Rhizomagastrodiae_C368-T04_good_111.910
SRR6049660Rhizomagastrodiae_C368-T01_good_115.260
SRR6049661Rhizomagastrodiae_C368-T04_good_115.530
SRR6049662Rhizomagastrodiae_C368-T01_good_119.350
SRR6049663Rhizomagastrodiae_C368-T01_good_114.870
SRR6049664Rhizomagastrodiae_C368-T10_good_121.130
SRR6049665Rhizomagastrodiae_C368-T10_good_121.130
SRP279888GastroGastrodia elata tuber 28.08
JuvenJuvenile tuber22.56
Mother_GastroMother tuber of Gastrodia elata 11.99
Mother_JuvenMother tuber of Juvenile 13.31