Gene detail

Detail information of GWHGAAEX001200/evm.TU.scaffold_107.27

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158336013\|ref\|YP_001517187.1\|	5.00E-35	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|670438372\|ref\|XP_008659680.1\|	0	PREDICTED: pleiotropic drug resistance protein 12 [Zea mays]
Swissprot	tr\|Q5Z9S8\|PDR12_ORYSJ	0	Pleiotropic drug resistance protein 12
trEMBL	tr\|I1Q309\|I1Q309_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA06G0152200.1}
TAIR	AT3G16340	0	pleiotropic drug resistance 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000106	1510593	1526859	-

Transcript Sequence
>GWHTAAEX001200 ATGGACAGTGTGGACTACAGCTGGAGCGGGAGCGTGAGCATGAGCCAGCGGGCGAGCCACCTGATGGGGCTGCCCTCGGCGAGCTTCGACGGTGTTTTCTCGCGATCCCGTGCGACGGAGGTGCGCGCGATGGAGGACGACGCGCTCCGCTGGGCCGCCCTCGAGAAGCTCCCCACCTACGACCGCCTGCGCACCGCGTTCGTGCAGCGCGCGCTTGACAGCTACGACGCCAACGACGGCGCCCGACGGTTCTACAAGTACCAGGAGGTCGACGTCGCCAAATTGGCCACGGCGGAGCGCCAGGAGTTCATCGCCAGGATCTTCAGGGAGGTCGATCAGGAAAGCCAGACCTTCCTCAAGAAGCTACGCGACCGGATCGATAAGGTTGGTGTGGAGCTCCCGACTGTGGAGGTCAGATTTGAAAATCTATCGGTCGAGGCGAAGTGCTATGTGGGCACGCGATCTCTGCCCACACTTGTTAACGTGTCCAAAAATGCAGCCGAGTCAATTTTGGGCCTGACGGGCCTGAGACTTACAAAAATGACCACTCTCAACATCCTCAAGGACATTTCTGGAATTTTAAAATCATCCAAAATGACATTACTCTTAGGACCTCCAGCTTCCGGTAAAACCACTTTGCTGCGAGCATTAGCAGGAAAACTGGACTCCACTTTAGAGATGGGAGGTGAGATAACATACAATGGATATAAGCTCCAAGAATTCGTCCCTCAAAAGACGGCAGCATACATTGGCCAGAACGACATGCATGCTGGCGAGATGACTGTGAAAGAGACTCTTGATTTCTCATCCAAATGCCAGGGCGTGGGAGATAGAAATGAACTTCTCAGCGAATTGACTAGAAGAGAGAAGGCTGAGGGCATATTACCTGACCCAGAAGTGGATCTTTTCATGAAGGCCACTTCTATTGGAGGTGGGAAGAACAGCCTTCAAACAGATTACACATTAAGAATTCTTGGACTAGACATATGTGCCGACACTGTTGTGGGTGATGAGATGAGAAGAGGAATATCAGGAGGACAAAAGAAGCGTGTAACTACAGGTGAGATGATCGTTGGGCCAACAAAGACATTATTCATGGATGAGATATCAACAGGGTTGGACAGCTCAACAACTTACCAAGTAGTGAAGTGCCTCCAACAAATTGTGCATCTGGGAGAAGCCACTATAATTATGTCTCTCCTGCAGCCGGCACCGGAGACATTTGACCTTTTTGATGAGATCATCCTAATGGCTGAGGGCCAGATTGTATACCAGGGACCGCGAGTGAATGTTATTGAGTTCTTTGAGAGTTGTGGGTTTCGATGCCCTGAAAGGAAGGGTACTGCTGACTTCTTACAGGAGGTCACCTCGAGGAAGGACCAACAGCAATATTGGGCAGACAAAACAAAGCCATATCGATACATTTCTGCACCTGAGTTTGTCAGACTTTTCAAACGCTTCCATGTTGGCAAGAGTTTGCAAAACAGGCTCTCATTTCCTTTTGATAAGAGACAGAGTCATGGAGCAGCCTTGGTGTTCACTAAGCGATCTGTGCCTTTGAAGGACCTCTTCAATGCCTCCTTTTCAAAGGAATGGCTTTTGATCAAGAGAAACTCTTTTGTTTATGTCTTCAAAGCTGTACAGCTCTTCATATTGGCATTACTAGCCTCGACTGTTTTCTTGAGAACAAACATGCATACAGAAAACGAACTTGATGGGGCTGTCTTCATTGGAGCAATCATCTACAGCCTCATTGTAAACATGTTCAATGGATTTGCTGAACTAGCACTTGCTCTCTTGAGGCTTCCGGTGTTTTACAAGCAAAGGGAGCTCCTTCTCTATCCACCATGGATCTTCAGCGTTCCAAACTGCATTATTCGGATTCCTATATCCATTGTGGAGTCCTTTGTTTGGGTGATTGTGACATACTACACCATAGGATTTGCCCCAGAAGCTAGTAGATTCCTCAAGCAGTTTCTCATATTCTTCCTAGTCCAACAGATGGCAGCAGGCCTCTTCAGGATTGTCGCAGGAGTGGCAAGAGCTTTGACTGCTGCAAACACTTTTGCTTGCCTCATAACACTCTTCTTTTTTTGTGTCAGTGGCTTTATGATACCCAAAGATATGATACCAAAATGGTGGAAGTGGGGTTACAAGATTGTGCCAACAACATATGCTTTTTCTGCTCTTGCAATCAATGAGATGCTTTCTCCTAGATGGATGGATACAGTTCTTCCTGATGGCAGAAGGTTGGGAACTGCAGTTCTAGATAACTATGATGTCTCTGCTGATGAGAGCCTGTTTTGGAAATCAGCCCTCATTCTTTTTGTATATACTATCTTCTTCAACGGTCTCTTCACATTATCCCTGATGTATCTTGATCGTAAGTCATTTAATTTTTTACTGATTAAAAAGATTTATATAAAAAAATTTAGCATTATCAATGACATTTATCCGTTTGAGATGATGGTCCGTGGTTCAGGTTCTCATAATGATGATGCTTCACCTGATTGGCGCGATTACGAAGCATACAAGAATGAATCCATAAAAGGTGCTCTACGAAAAGGAATGGTTCTTCCTTTTACACCCCTTGCTATGTCTTTCAACGATGTGAACTACTATGTTGACACGCCTCCTGAAATGAAAGAGCAAGGAGTTACTGAAGATAAGCTCCAATTGTTGAGGGGGGTTACTGGTGCATTTCGTCCGGGAATTCTTACAGCCTTGATGGGTGTGAGTGGTGCCGGAAAGACAACCCTTATGGATGTTTTGGCAGGCAGAAAGACTGGTGGCTACATAGAAGGAGATATTCGAATTTCAGGTTACCCGAAAAACCAGGCAACATTTGCAAGGATTTCAGGATACTGTGAGCAATTTGATATTCATTCTCCTCAGCTTACTATCCAAGAATCTTTGACTTTCTCAGCATTATTGCGTCTTAGTAGTGATGTACGCAAGGAAGAAAAATTGAGATTTGTGGATGAAGTGATGGAACTGGTTGAGCTTAGAAACCTCAAGGATGCATTAGTGGGACTTCCAGGAATTACTGGTCTATCCACTGAACAAAGAAAAAGACTGACTATAGCAGTGGAGCTTGTTGCTAATCCTTCAATCATTTTTATGGATGAACCTACATCAGGTCTTGATGCAAGGGCGGCTGCTATTGTGATGAGAACAGTGAGAAACACTGTTGACACTGGAAGAACTGTTGTTTGTACAATCCATCAACCGAGCATTCATATATTTGAGTCCTTTGATGAGTTGCTTCTAATGAAAAGAGGGGGGCAAGTCATTTACTACGGATCTTTGGGACAGAACTCTCAGAAATTGATTGGTTATTTTGAGGAAATTCCGGGAGTTCAAAAGATTACAGAAGCACGCAACCCTGCAGATTGGATGCTTGAAGCAAGCTCCGTTGCCTCGGAGGCAAGGCTAGGAATCGATTTTGCAGATACATACAAGTCTTCAGACTTGCACAAGCGCAACACCACGCTGGTCAAAGAGCTGAGCAAAGCGGTCGCAGGCGCAAGCGATCTCTACTTCCCAACTCCATTCGCCCAATCCAACTTGGGGCAGTTCAAAATTTGCCTGTGGAAGAACTGGTCCGTGTATTGGAGAAGCCCCGAGTACAACCTCTCCAGGCTCGGCGTCACTATCGTCACCGCCCTCCTCCTCGGCACCGTTTTTTGGAAGATTGGTCACAAGACGGAAAAGTCTAGTTCTATCACAGTTGTCATTGGAGCAATGTACCTGGCAGTCATATTTGTCGGCTTCGGGAACTGCTCCACAGTGCAGCCAATCATCACCACGGAGCGCTCTGTTTTTTATCGCGAGAAGGCAGCGGGCTTGTACTCGGATCTACCTTACGCTCTTTCGCAGGTGTTTGTAGAGGTGCCCTACGTGTTGTTCCAGGCGACGTACTACTCGCTGATGGTGTATTCGATGATGGGCTTCGAGTGGACCCTGGCAAAATTTCTGTGGTTCTTCATCGTCTCCTTCATGACTTTCCTCTACTTCACGTACTACGGAATGATGACGGTGGCTGTGACCCCAAACATCCAGGTGGCAGGAATCCTCTCCACGTGCTTCTTCTTCCTCTTCAATCTCTTCTCCGGGCTCTTCATCGCTAGGCCGGTGAGTCACCGCAAACTTTACCCCATTGCCTCTTCGATCTCTTCTCATATTGAGATTGAATTGCAGGCAATTCCGAAATGGTGGGTGTGGTACTACTGGTGCTGCCCGGTGTCGTGGACGCTGTACGGGCTAATCGTGACGCAGTACAGCGACCTGCAGGATATGATCGAAGTTCCCGGCCAGCCCAAGCAGAGCATTTCGGACTACGTCATGCACCACTACGGCTTCAGGAGCGACTTCACCGGCATCATGATCGCCGTCCTCATCGCCTTCACTATCCTCTTTGCCTACACGTACACCCACGCCATCCGCGCTCTTAATTTCCAGCAGAGGTAG

Network for GWHGAAEX001200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	112	162	4.10E-12
PF00005.26	ABC_tran	187	369	1.40E-13
PF01061.23	ABC2_membrane	524	734	1.40E-39
PF08370.10	PDR_assoc	746	794	1.50E-11
PF00005.26	ABC_tran	895	1046	1.10E-18
PF01061.23	ABC2_membrane	1192	1378	3.60E-44

Protein Sequence

>GWHPAAEX001200
MDSVDYSWSGSVSMSQRASHLMGLPSASFDGVFSRSRATEVRAMEDDALRWAALEKLPTYDRLRTAFVQRALDSYDANDGARRFYKYQEVDVAKLATAERQEFIARIFREVDQESQTFLKKLRDRIDKVGVELPTVEVRFENLSVEAKCYVGTRSLPTLVNVSKNAAESILGLTGLRLTKMTTLNILKDISGILKSSKMTLLLGPPASGKTTLLRALAGKLDSTLEMGGEITYNGYKLQEFVPQKTAAYIGQNDMHAGEMTVKETLDFSSKCQGVGDRNELLSELTRREKAEGILPDPEVDLFMKATSIGGGKNSLQTDYTLRILGLDICADTVVGDEMRRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQVVKCLQQIVHLGEATIIMSLLQPAPETFDLFDEIILMAEGQIVYQGPRVNVIEFFESCGFRCPERKGTADFLQEVTSRKDQQQYWADKTKPYRYISAPEFVRLFKRFHVGKSLQNRLSFPFDKRQSHGAALVFTKRSVPLKDLFNASFSKEWLLIKRNSFVYVFKAVQLFILALLASTVFLRTNMHTENELDGAVFIGAIIYSLIVNMFNGFAELALALLRLPVFYKQRELLLYPPWIFSVPNCIIRIPISIVESFVWVIVTYYTIGFAPEASRFLKQFLIFFLVQQMAAGLFRIVAGVARALTAANTFACLITLFFFCVSGFMIPKDMIPKWWKWGYKIVPTTYAFSALAINEMLSPRWMDTVLPDGRRLGTAVLDNYDVSADESLFWKSALILFVYTIFFNGLFTLSLMYLDRKSFNFLLIKKIYIKKFSIINDIYPFEMMVRGSGSHNDDASPDWRDYEAYKNESIKGALRKGMVLPFTPLAMSFNDVNYYVDTPPEMKEQGVTEDKLQLLRGVTGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQATFARISGYCEQFDIHSPQLTIQESLTFSALLRLSSDVRKEEKLRFVDEVMELVELRNLKDALVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIHIFESFDELLLMKRGGQVIYYGSLGQNSQKLIGYFEEIPGVQKITEARNPADWMLEASSVASEARLGIDFADTYKSSDLHKRNTTLVKELSKAVAGASDLYFPTPFAQSNLGQFKICLWKNWSVYWRSPEYNLSRLGVTIVTALLLGTVFWKIGHKTEKSSSITVVIGAMYLAVIFVGFGNCSTVQPIITTERSVFYREKAAGLYSDLPYALSQVFVEVPYVLFQATYYSLMVYSMMGFEWTLAKFLWFFIVSFMTFLYFTYYGMMTVAVTPNIQVAGILSTCFFFLFNLFSGLFIARPVSHRKLYPIASSISSHIEIELQAIPKWWVWYYWCCPVSWTLYGLIVTQYSDLQDMIEVPGQPKQSISDYVMHHYGFRSDFTGIMIAVLIAFTILFAYTYTHAIRALNFQQR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.950
SRP064423	SRR2545915	Juvenile tuber	1.970
SRP108465	SRR5643513	five period of Gastrodia elata	37.370
	SRR5643514	five period of Gastrodia elata	69.300
	SRR5643515	five period of Gastrodia elata	34.980
	SRR5643524	five period of Gastrodia elata	66.080
	SRR5643525	five period of Gastrodia elata	1.120
	SRR5643528	five period of Gastrodia elata	1.230
	SRR5643658	five period of Gastrodia elata	0.850
	SRR5643659	five period of Gastrodia elata	1.890
	SRR5643660	five period of Gastrodia elata	3.640
	SRR5643661	five period of Gastrodia elata	2.830
	SRR5643662	five period of Gastrodia elata	0.760
	SRR5643663	five period of Gastrodia elata	0.690
	SRR5643664	five period of Gastrodia elata	1.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	77.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	78.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	60.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	80.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	58.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	100.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	103.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	65.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	65.050
SRP279888	Gastro	Gastrodia elata tuber	1.55
	Juven	Juvenile tuber	383.56
	Mother_Gastro	Mother tuber of Gastrodia elata	31.32
	Mother_Juven	Mother tuber of Juvenile	86.10