Detail information of GWHGAAEX001201/evm.TU.scaffold_107.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521460814|ref|YP_008147516.1| | 7.00E-22 | hypothetical protein SCE1572_05300 [Sorangium cellulosum So0157-2] |
| nr | gi|695057470|ref|XP_009417009.1| | 0 | PREDICTED: putative receptor protein kinase CRINKLY4 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O24585|CRI4_MAIZE | 0 | Putative receptor protein kinase CRINKLY4 (Precursor) |
| trEMBL | tr|M8C4T9|M8C4T9_AEGTA | 0 | Putative receptor protein kinase CRINKLY4 {ECO:0000313|EMBL:EMT10158.1} |
| TAIR | AT3G59420 | 0 | crinkly4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000106 | 1559516 | 1562358 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001201
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13540.5 | RCC1_2 | 206 | 229 | 1.90E-06 |
| PF00069.24 | Pkinase | 414 | 679 | 5.10E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_CR4L |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.360 |
| SRR2545915 | Juvenile tuber | 1.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.660 |
| SRR5643514 | five period of Gastrodia elata | 5.950 | |
| SRR5643515 | five period of Gastrodia elata | 4.580 | |
| SRR5643524 | five period of Gastrodia elata | 4.780 | |
| SRR5643525 | five period of Gastrodia elata | 4.120 | |
| SRR5643528 | five period of Gastrodia elata | 7.860 | |
| SRR5643658 | five period of Gastrodia elata | 2.550 | |
| SRR5643659 | five period of Gastrodia elata | 2.370 | |
| SRR5643660 | five period of Gastrodia elata | 0.790 | |
| SRR5643661 | five period of Gastrodia elata | 2.450 | |
| SRR5643662 | five period of Gastrodia elata | 2.580 | |
| SRR5643663 | five period of Gastrodia elata | 2.300 | |
| SRR5643664 | five period of Gastrodia elata | 3.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.45 |
| Juven | Juvenile tuber | 6.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.61 | |
| Mother_Juven | Mother tuber of Juvenile | 6.65 |