Detail information of GWHGAAEX001205/evm.TU.scaffold_107.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|153009823|ref|YP_001371038.1|1.00E-4730S ribosomal protein S9 [Ochrobactrum anthropi ATCC 49188]
KOGKOG16979.00E-75Mitochondrial/chloroplast ribosomal protein S9
nrgi|743841796|ref|XP_010937627.1|9.39E-168PREDICTED: 28S ribosomal protein S9, mitochondrial-like [Elaeis guineensis]
Swissprottr|Q1XDJ7|RR9_PYRYE2.00E-2530S ribosomal protein S9, chloroplastic
trEMBLtr|M0RV19|M0RV19_MUSAM5.00E-157Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P24390_001}
TAIRAT3G490809.00E-75Ribosomal protein S5 domain 2-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010616257451637479-
Transcript Sequence

Network for GWHGAAEX001205

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00380.18Ribosomal_S93154354.00E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02996RP-S9, MRPS9, rpsI Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.050
SRR2545915Juvenile tuber22.460
SRP108465SRR5643513five period of Gastrodia elata23.400
SRR5643514five period of Gastrodia elata25.340
SRR5643515five period of Gastrodia elata22.800
SRR5643524five period of Gastrodia elata23.990
SRR5643525five period of Gastrodia elata22.330
SRR5643528five period of Gastrodia elata15.690
SRR5643658five period of Gastrodia elata18.100
SRR5643659five period of Gastrodia elata25.610
SRR5643660five period of Gastrodia elata25.380
SRR5643661five period of Gastrodia elata26.380
SRR5643662five period of Gastrodia elata23.250
SRR5643663five period of Gastrodia elata23.060
SRR5643664five period of Gastrodia elata22.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.750
SRR6049655Rhizomagastrodiae_C368-T10_good_114.850
SRR6049656Rhizomagastrodiae_C368-T07_good_125.160
SRR6049657Rhizomagastrodiae_C368-T07_good_125.300
SRR6049658Rhizomagastrodiae_C368-T04_good_122.270
SRR6049659Rhizomagastrodiae_C368-T04_good_123.620
SRR6049660Rhizomagastrodiae_C368-T01_good_124.460
SRR6049661Rhizomagastrodiae_C368-T04_good_121.390
SRR6049662Rhizomagastrodiae_C368-T01_good_127.160
SRR6049663Rhizomagastrodiae_C368-T01_good_125.660
SRR6049664Rhizomagastrodiae_C368-T10_good_126.200
SRR6049665Rhizomagastrodiae_C368-T10_good_126.200
SRP279888GastroGastrodia elata tuber 23.71
JuvenJuvenile tuber33.32
Mother_GastroMother tuber of Gastrodia elata 13.25
Mother_JuvenMother tuber of Juvenile 18.03