Detail information of GWHGAAEX001206/evm.TU.scaffold_107.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325959049|ref|YP_004290515.1| | 1.00E-104 | sugar transporter [Methanobacterium sp. AL-21] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|743765166|ref|XP_010912803.1| | 0 | PREDICTED: inositol transporter 1-like [Elaeis guineensis] |
| Swissprot | tr|Q8VZR6|INT1_ARATH | 0 | Inositol transporter 1 |
| trEMBL | tr|M0TWT7|M0TWT7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02300_001} |
| TAIR | AT2G43330 | 0 | inositol transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000106 | 1637973 | 1671974 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001206
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 38 | 468 | 5.60E-117 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.050 |
| SRR2545915 | Juvenile tuber | 5.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.600 |
| SRR5643514 | five period of Gastrodia elata | 11.230 | |
| SRR5643515 | five period of Gastrodia elata | 8.520 | |
| SRR5643524 | five period of Gastrodia elata | 11.210 | |
| SRR5643525 | five period of Gastrodia elata | 8.260 | |
| SRR5643528 | five period of Gastrodia elata | 7.560 | |
| SRR5643658 | five period of Gastrodia elata | 9.080 | |
| SRR5643659 | five period of Gastrodia elata | 6.920 | |
| SRR5643660 | five period of Gastrodia elata | 4.130 | |
| SRR5643661 | five period of Gastrodia elata | 5.220 | |
| SRR5643662 | five period of Gastrodia elata | 2.830 | |
| SRR5643663 | five period of Gastrodia elata | 4.570 | |
| SRR5643664 | five period of Gastrodia elata | 3.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.31 |
| Juven | Juvenile tuber | 6.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.38 | |
| Mother_Juven | Mother tuber of Juvenile | 6.16 |