Gene detail

Detail information of GWHGAAEX001212/evm.TU.scaffold_107.44

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3346	2.00E-82	Phosphatidylethanolamine binding protein
nr	gi\|242073536\|ref\|XP_002446704.1\|	6.63E-104	hypothetical protein SORBIDRAFT_06g020850 [Sorghum bicolor]
Swissprot	tr\|Q93WI9\|HD3A_ORYSJ	1.00E-85	Protein HEADING DATE 3A
trEMBL	tr\|C5YBB2\|C5YBB2_SORBI	2.00E-104	Putative uncharacterized protein Sb06g020850 {ECO:0000313\|EMBL:EES11032.1}
TAIR	AT1G65480	2.00E-82	PEBP (phosphatidylethanolamine-binding protein) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000106	2099854	2102427	+

Transcript Sequence
>GWHTAAEX001212 CAGAATAATATAAGCAAAAACATTCTCTTGTTTAAAGAATTTTAATTACACACATTTATCCTTTTCTATCTTCTTTTTAGCATATAATAAAATAAAAATTCCTTGAACACTATCACATGATCAAAGATGGCTGTGACATAATAAAATTCTTACAGTTGATGAATGAATATATTAGAATCGTTTCCTAAAGGAGAGGAATTAGCCAAGTCTTGAACTTTATGTTTTAATCCTCACTATCTTCTATGAGCTCATCAAGGAATCAGGCAATGGTAAGAATCTCCCATCCTTTTTCACTAAGTTGTGCTTTATTTTTCTTAATTATTTTTTCTTTTGATGCATGAGCTCTCTCCATAATAATTATCCTCCCATACTTTAAGAAGGAATAAAATTTGGAAGCTTGCTAGAAAGATTATATTCATAGTCATATGAATTGCTCAGTCAAATTTAGCATATCTGAGTCACATTCCCTTCCCACACTTTTTTGGCATTTAATCCCTATTATGCGTGGCAATTTGCTCTTATGGAGTGAAAAGAGATTCTATGGAATCCATTCTCACAATATATATAGCCTCCCCTTCATTTGACAAATCCACCTCACACAAATCTATAAGTTTAATTTTGACTCTTAGTCATCTTAACTGTACGACACAATCTTCTTATTGATTTTGTTTGAAACATTTAGCCATGTCAAGGGATCCATTGGTCATTGGCAGAGTCGTCGGCGACGTCCTCGACCCATTCATTAGGACGGCGATGATGAGAGTGATCTATAACAATAAGGATTTTACAAGCGGCTCTGATTTGAAGCCTTCAATGGTGGCCAAAGAGCCTCAAGTGGAGATTTATGGGTGTGGCATTAAGTCACTATATACGCTTGTGATGGTAGATCCTGATGCTCCCAGCCCAAGCAATCCAACCAAAAGAGAGCACCTGCACTGGTTGGTGACAGACATTCCAGAAATGGCCAATGCAAGCTATGGAAATGAAGTGGTAAGTTATGAGAGTCCAAAGCCAACAGCTGGAATACATAGATTTGTTTTTGTGCTGTTCAGACAGTCTGTAACACAGACAATTTATGCCCCTGGATGGCGCCAGAATTTTAATACTAAAGACTTCTCCCAACTGTACAATCTGGGCTCTCCTGTGGCTGCAATGTATTTTAATTGCCAGAGGGAAAATGGCTGCGGCGGGAGAAGATACTGATATCCTGACTATTGAAATCATCGTCGGACTATTAAAAAGTATTCAATTTAGTCTCCCACTATTAAGATGTTCAAATATATACATATATAGTCTCATAATGTGACATTTGCTATTTAAATAAATAATGAAGCTGCACAAACTCACTCCGAGGCTCAAAAAAGAGTCATGTGAGTTTCATAGTATGCTTAAGAAAAAGATTTCAGTGCAATTTGATGTCAACATATTAAGACTATTTTGAAGGTCTAAATTAGTTGACATATAGTTAATGTATAATTACGAGTGAAGAAGTCTTAATGAATGTGGTGTTATATGTATAACTACATGTAACGAAGTCTAAATGAATGTGGTGTTTAAATCCTCAATGTCTTCTCTTTCGATTCTGATTTGTGTGACTATTATTTATAATCAATATTTGAAACTACTCAATTTCTTATGGGTGAAGGGGTGATACTACTAATCTATAATTTAA

Network for GWHGAAEX001212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01161.19	PBP	49	158	1.70E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16223	FT	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.890
SRP064423	SRR2545915	Juvenile tuber	0.580
SRP108465	SRR5643513	five period of Gastrodia elata	0.630
	SRR5643514	five period of Gastrodia elata	0.540
	SRR5643515	five period of Gastrodia elata	0.900
	SRR5643524	five period of Gastrodia elata	0.240
	SRR5643525	five period of Gastrodia elata	38.650
	SRR5643528	five period of Gastrodia elata	46.780
	SRR5643658	five period of Gastrodia elata	296.310
	SRR5643659	five period of Gastrodia elata	0.200
	SRR5643660	five period of Gastrodia elata	0.040
	SRR5643661	five period of Gastrodia elata	0.350
	SRR5643662	five period of Gastrodia elata	0.430
	SRR5643663	five period of Gastrodia elata	0.490
	SRR5643664	five period of Gastrodia elata	0.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.290
SRP279888	Gastro	Gastrodia elata tuber	0.49
	Juven	Juvenile tuber	0.29
	Mother_Gastro	Mother tuber of Gastrodia elata	0.29
	Mother_Juven	Mother tuber of Juvenile	0.37