Detail information of GWHGAAEX001216/evm.TU.scaffold_107.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-172 | FOG: PPR repeat |
| nr | gi|672136277|ref|XP_008791830.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SJZ3|PP169_ARATH | 5.00E-173 | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial (Precursor) |
| trEMBL | tr|A0A067L6X2|A0A067L6X2_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP40215.1} |
| TAIR | AT2G22410 | 2.00E-172 | SLOW GROWTH 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000106 | 2467912 | 2469897 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001216
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 112 | 140 | 0.00042 |
| PF13812.5 | PPR_3 | 174 | 208 | 0.0034 |
| PF13041.5 | PPR_2 | 210 | 257 | 6.90E-10 |
| PF01535.19 | PPR | 285 | 305 | 0.013 |
| PF01535.19 | PPR | 313 | 343 | 4.30E-09 |
| PF01535.19 | PPR | 344 | 370 | 1.70E-06 |
| PF13041.5 | PPR_2 | 444 | 490 | 3.90E-09 |
| PF01535.19 | PPR | 517 | 544 | 0.3 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.430 |
| SRR2545915 | Juvenile tuber | 1.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.590 |
| SRR5643514 | five period of Gastrodia elata | 1.570 | |
| SRR5643515 | five period of Gastrodia elata | 1.480 | |
| SRR5643524 | five period of Gastrodia elata | 1.480 | |
| SRR5643525 | five period of Gastrodia elata | 1.140 | |
| SRR5643528 | five period of Gastrodia elata | 0.320 | |
| SRR5643658 | five period of Gastrodia elata | 0.480 | |
| SRR5643659 | five period of Gastrodia elata | 2.760 | |
| SRR5643660 | five period of Gastrodia elata | 2.650 | |
| SRR5643661 | five period of Gastrodia elata | 1.620 | |
| SRR5643662 | five period of Gastrodia elata | 2.430 | |
| SRR5643663 | five period of Gastrodia elata | 2.220 | |
| SRR5643664 | five period of Gastrodia elata | 1.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.22 |
| Juven | Juvenile tuber | 1.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.68 | |
| Mother_Juven | Mother tuber of Juvenile | 0.60 |