Detail information of GWHGAAEX001219/evm.TU.scaffold_107.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428306987|ref|YP_007143812.1|0homoaconitate hydratase family protein [Crinalium epipsammum PCC 9333]
KOGKOG045403-isopropylmalate dehydratase (aconitase superfamily)
nrgi|743775365|ref|XP_010918062.1|0PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Elaeis guineensis]
Swissprottr|Q94AR8|LEUC_ARATH03-isopropylmalate dehydratase large subunit (Precursor)
trEMBLtr|M5XSL7|M5XSL7_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ28924.1}
TAIRAT4G134300isopropyl malate isomerase large subunit 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010626644332677102-
Transcript Sequence

Network for GWHGAAEX001219

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00330.19Aconitase704971.20E-78
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01703leuC, IPMI-L Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
C5-Branched dibasic acid metabolismmap00660
Cysteine and methionine metabolismmap00270
Glucosinolate biosynthesismap00966

Gene Ontology

GO term OntologyName
GO:0008652Biological Processcellular amino acid biosynthetic process
GO:0051539Molecular Function4 iron, 4 sulfur cluster binding
GO:0003861Molecular Function3-isopropylmalate dehydratase activity
GO:0016836Molecular Functionhydro-lyase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms49.160
SRR2545915Juvenile tuber68.880
SRP108465SRR5643513five period of Gastrodia elata78.970
SRR5643514five period of Gastrodia elata95.010
SRR5643515five period of Gastrodia elata77.740
SRR5643524five period of Gastrodia elata88.860
SRR5643525five period of Gastrodia elata48.960
SRR5643528five period of Gastrodia elata61.300
SRR5643658five period of Gastrodia elata44.540
SRR5643659five period of Gastrodia elata74.090
SRR5643660five period of Gastrodia elata75.220
SRR5643661five period of Gastrodia elata74.040
SRR5643662five period of Gastrodia elata83.830
SRR5643663five period of Gastrodia elata82.680
SRR5643664five period of Gastrodia elata79.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_168.050
SRR6049655Rhizomagastrodiae_C368-T10_good_169.850
SRR6049656Rhizomagastrodiae_C368-T07_good_172.360
SRR6049657Rhizomagastrodiae_C368-T07_good_166.380
SRR6049658Rhizomagastrodiae_C368-T04_good_155.110
SRR6049659Rhizomagastrodiae_C368-T04_good_149.910
SRR6049660Rhizomagastrodiae_C368-T01_good_163.460
SRR6049661Rhizomagastrodiae_C368-T04_good_163.350
SRR6049662Rhizomagastrodiae_C368-T01_good_193.370
SRR6049663Rhizomagastrodiae_C368-T01_good_168.550
SRR6049664Rhizomagastrodiae_C368-T10_good_184.080
SRR6049665Rhizomagastrodiae_C368-T10_good_184.080
SRP279888GastroGastrodia elata tuber 87.73
JuvenJuvenile tuber87.35
Mother_GastroMother tuber of Gastrodia elata 47.96
Mother_JuvenMother tuber of Juvenile 59.21