Gene detail

Detail information of GWHGAAEX001220/evm.TU.scaffold_107.55

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|119718818\|ref\|YP_925783.1\|	2.00E-73	DEAD/DEAH box helicase [Nocardioides sp. JS614]
KOG	KOG0329	0	ATP-dependent RNA helicase
nr	gi\|672112563\|ref\|XP_008806594.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LFN6\|RH56_ARATH	0	DEAD-box ATP-dependent RNA helicase 56
trEMBL	tr\|A0A061GJ96\|A0A061GJ96_THECC	0	DEAD/DEAH box RNA helicase family protein isoform 2 {ECO:0000313\|EMBL:EOY29498.1}
TAIR	AT5G11200	0	DEAD/DEAH box RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000106	2701194	2711137	+

Transcript Sequence
>GWHTAAEX001220 CAAAGGCAACAAAACTCATTGTGGTTTATTTAACGGTGGATCGCGAAGGTCAACGACGGCTGATCTTCATTGATGCCCTACCACTGGTTCGTGTTATAAAAGTAGATAACCGTGGCAAGCCATTCCATTCTCTCTTCTTCTCTTTGAAACCCTAGCCGGAAAATTTTGTTGTTCCTTTTTTTTGTTAGTCCTAGAAACCTAGATTCGATTTTCCGATACCTTGACATCCATTGGATATTTTATCTTCTTCTTAGGATGGGTGAAGCAAGAGACAACGACGCCTACGAGGAGGAGCTACTTGACTATGAAGAGGACGAAGAGAAGGCCCCAGACTCACTTGGGGTGAAAGTTAACGGTGAATCTGCCAAAAAGGGCTATGTAGGTATCCACAGTTCCGGATTTAGAGATTTTCTGTTGAAACCAGAGCTTCTCAGGGCTATAGTTGATTCTGGATTTGAGCATCCATCTGAAGTACAACATGAGTGCATACCTCAAGCTATTTTGGGAATGGACGTCATCTGTCAAGCAAAGTCTGGAATGGGGAAAACTGCTGTCTTTGTTCTCTCAACTCTTCAACAAATAGAGCCCATCGCTGGTCAAATTGCTGCTCTTGTTCTATGTCATACTAGGGAACTGGCTTACCAGATCTGCCATGAGTTTGAGAGATTCAGCACTTACTTGCCTGACATCAAAGTTGCTGTTTTTTATGGTGGCGTTCACATTGGAAAGCACAAGGATATACTGAAAAATGAATGTCCTCACATAGTTGTTGGAACTCCAGGAAGAATTTTGGCACTTGCTAGAGATAAAGACCTTTCTTTGCGGAATGTGAGGCACTTCATTCTTGATGAATGTGACAAGATGTTAGACTCACTTGACATGCGGAGAGATGTGCAGGAAATCTTCAAAATGACTCCTCATGATAAGCAGGTTATGATGTTTTCTGCCACATTAAGCAAGGAGATACGCCCTGTTTGCAAGAAGTTCATGCAAGATCCAATGGAAATATATGTGGATGATGAAGCCAAACTAACCCTGCATGGGCTAGTACAGCACTACATCAAACTCAGTGAACTGGAGAAGAATCGTAAATTGAATGATCTTTTGGATGCGTTGGATTTCAATCAGGTTGTAATTTTTGTCAAGAGTGTCAACAGGGCAGCAGAGTTGAACAAGTTGCTAGTAGAGTGTAATTTTCCATCTATCTGCATTCACTCTGGAATGTCACAGGAAGAAAGATTAACAAGGTACAAGGGCTTCAAGGAGGGACACAAAAGGATTCTCGTAGCTACAGATCTGGTTGGGCGTGGGATTGACATTGAGCGCGTAAACATTGTGATCAACTATGACATGCCTGATTCCGCTGATACATATTTGCACAGGGTTGGCAGGGCTGGAAGATTTGGCACCAAAGGGCTGGCCATCACGTTTGTTTCTTCGGCTTCTGATTCCGATGTTCTCAATCAGGTGCAAGCTAGATTTGAAGTTGACATAAAGGAATTGCCGGAGCAGATTGATACTTCCACATATATGCCTTCGTGAGGTACCAGAGGGGAGATCCGTTCTGCCCAACTGATCAAAAGGGGCTACACACCTGTTTTGTTCAGTAAGAGCAATTGGGCTTGAAATGTGGTGGAAGTTTGTGATGCGCAATTATAGTTAGAACTGCGTTAATGTTGTTAGATGTGTTTTGTTAAAACCCTAGCTTTTTAGATTTTTATTAGGGTTTGTATCATGCATTTTCCTTATCTGCTGTGGGATTGTGTTTTGACAGTGATTTTTATGTTCAGCCTGTGATGTTTGTTCCTCTTTTTAATTGTCAAAGTTTATGCTATACAATTTAAGTGCTTCATAAATGTTTATGATATTTACTTTAATCCACATATAAAGTTGTATTCCTTTTTTGATAGTTCTTAAAAGTTGTTTCTCAATATACGCACCTAAAAGAAAATACATAATTCCATTTTGATCATCAATTTGCATTTAAATGATATATTCTTAATCACAGAATGCCTACAATTCCTAAGATTTCCAATATTAAAGAAGCTTGTAGAATAAGATGGAAATCTATAATAAATAAATTAAAAGGTGATGACCCGCAAATATAGTTGTATTATACAAATCCTAGTGAAGCATAAATAATACTAAATCATCAAACTTGTTCTATTCATCCTATTATGGAAGTAAGAATATGGGTTTTGAGTGCTTTCTGTGCAACTGTTAAAAAGTTTTTGCAATAAATAAAAGCATGAAATTAGCATACAATACAAAAAAGAAAAAATCAGAATCGAGCCACAATACCTCTATCGGTCGTTTGATAATCGAATCTTGCTTATTTTGAAGATAATTAGTAAGAAACGAACGCATTTGAATGATCCTTCAATTGAGCAAAAGATGAAAGGCTTAGACAATGTATGAGAGTCCGTCCGCCTCCCCTCTCCTCTGTTAAAAAAACAAATGATCCTTAAAATGAAATTGTGATTTACGAATTAAAAAAAATCGCGAGAAATAAAAAAAAAATTGCACTTTAACGTACACAATTGTTTTTCTCCTCTATAGGTTTCTCT

Network for GWHGAAEX001220

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	72	237	1.90E-37
PF00271.30	Helicase_C	277	384	1.70E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12812	DDX39B, UAP56, SUB2	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	186.430
SRP064423	SRR2545915	Juvenile tuber	183.470
SRP108465	SRR5643513	five period of Gastrodia elata	154.690
	SRR5643514	five period of Gastrodia elata	145.750
	SRR5643515	five period of Gastrodia elata	144.930
	SRR5643524	five period of Gastrodia elata	150.730
	SRR5643525	five period of Gastrodia elata	118.340
	SRR5643528	five period of Gastrodia elata	124.610
	SRR5643658	five period of Gastrodia elata	136.160
	SRR5643659	five period of Gastrodia elata	100.540
	SRR5643660	five period of Gastrodia elata	101.510
	SRR5643661	five period of Gastrodia elata	101.140
	SRR5643662	five period of Gastrodia elata	108.550
	SRR5643663	five period of Gastrodia elata	100.880
	SRR5643664	five period of Gastrodia elata	94.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	145.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	105.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	164.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	166.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	198.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	230.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	190.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	193.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	176.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	181.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	185.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	185.270
SRP279888	Gastro	Gastrodia elata tuber	125.08
	Juven	Juvenile tuber	152.22
	Mother_Gastro	Mother tuber of Gastrodia elata	143.63
	Mother_Juven	Mother tuber of Juvenile	174.12