Gene detail

Detail information of GWHGAAEX001221/evm.TU.scaffold_107.56

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|256420160\|ref\|YP_003120813.1\|	4.00E-80	AMP-dependent synthetase and ligase [Chitinophaga pinensis DSM 2588]
KOG	KOG1256	0	Long-chain acyl-CoA synthetases (AMP-forming)
nr	gi\|672106994\|ref\|XP_008788745.1\|	0	PREDICTED: long chain acyl-CoA synthetase 4-like [Phoenix dactylifera]
Swissprot	tr\|Q9T0A0\|LACS4_ARATH	0	Long chain acyl-CoA synthetase 4
trEMBL	tr\|M0SJM0\|M0SJM0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P32060_001}
TAIR	AT4G23850	0	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000106	2711141	2722959	+

Transcript Sequence
>GWHTAAEX001221 TATATATATATATATATTTACAAACGTCCATCCGCAAGAAAGCCATCGACGGGTGAAAGCTGGTGGCCGCCTTAAAGAAAGATATATAAGACTGTAGAAAGAAATCGTAACCACCTCACCATCCTTTCTAACGAATGCGAATGCGATGTTCCCTTTTAAAGCATGGAGTCAGGAATTGGAGTGCTGCGAAATCGATTATCTGAAATGAAGTACTTGGTGGAGGTGGAGAAGGGGAGAAAAGGCGGAGCCAATGGATCGCCGTCGGTCGGTCCCACCTACCGGAGCGCAATCGCCAAAGACGGATTTCCTTCGCCGGTTCCTGGCCTCGATAGCTGCTGGGATGTCTTTCGCATGTCTGTGGAGAGAAATCCAAGTAAACAGATGCTAGGACGTCGCGAGGTTGTTAATGGGAAGGCAGGGAAATATGCCTGGCTAACCTATAAAGAGGTGTATGATATTGTGATGAAAGTTGGAGCTTCTATTAAAAGCTGCGGAATCCAGAAGGGCGGATGTTGTGGTATCTATGGTGTAAACTGTCCTGAATGGATTATTAGCATGGAGGCTTGCAATGCTCACGGAATTTATTGTGTTCCATTGTATGATACCCTTGGAGCTGGTGCTGTTGAATTTATAATAAGCCACGCAGAAGTACAGATTGCATTTGTGGAAGAAAATAAGATTGCAGAGCTGCTGAAAACCTTTCCCAATGCAGCCAGGTTCTTGAAAATCATTGTGAGTTTTGGAAACATTTCTCCAGCGCAAAAAGATGAGTTTGGAAATTTTGGTTTGAAAGCTTACCCCTGGGATGAGTTCTTGCTTTTAGGCAATAACCAAAAAGTTGAACTCCCTTTGATCAATAAAACGGATATCTGTACAATTATGTACACTAGCGGAACAACAGGAGATCCTAAGGGTGTACTAATTTCTAATGAAAGCATCCTTACTCTTATCGCTGGCATTAATCGATTGCTTGAATCCATGAATCAGCAGTTACATGGCGATGATGTTTATTTATCGTACCTCCCTCTTGCCCATATATTTGATCGGGTGGTAGAGGAGATGCTTATTTTTCATGGTGGCTCAATTGGATTTTGGGGCAGGGATGTCAAGCTGTTAGTTGAAGACATAGGTGCGCTAAAACCAACTATTTTTTGTGCAGTTCCTCGTGTATTAGATCGTATTTATGCGGGTTTACAGGAGAGAATCTCTGGAGGAGGCCTTTTAAAGAACGCTTTGTTTAACATTGCCTACAGATACAAGCTACACAATATGATAAACGGAAGAAAACACGAGGAAGCTGCTTCATTTTTTGATAAAATAATATTTAATAAGGTTAAGCAAGGACTAGGTGGAAATGTGCGACTTATTTTATCTGGTGCTGCTCCTTTAGGCACTCACGTGGAAGAGTTCTTACGGGTTGTCACGTGTGCTCATGTTGTGCAAGGCTATGGTCTCACGGAGACCTGCGCAGGAACCTTTGTCTCACTGCCAAATGCCCTATCAATGATCGGAACAGTTGGTCCTCCTGTGCCAAATATAGATGTGCGGTTGGAGTCTGTTCCTGAGATGGGCTATGATGCACTATCAGATCAGCCTCGTGGGGAGATTTGTGTCAGGGGGAAAACCTTGTTCTCAGGATACTACAAAAGGGATGACCTCACTAACGAGGTTATGGTTGATGGCTGGTTCCACACAGGAGATATTGGTGAATGGCAATCAGATGGAGCTTTGAAGGTTATTGATCGTAAGAAGAACATTTTTAAGCTTTCCCAGGGTGAATATGTTGCCGTGGAATACTTGGAGAACATTTACAGTTCCATTTCTATTATGGATTCAATTTGGGTCTATGGCAATAGTTTCAAGTCCTTCCTGGTGGCTGTCATCAATCCAAACAGCCAAGCTCTCGAGCGTTGGGCCGAAGAGAACGGCATTAGCGGGGATTTTCCTTTACTTTGTGAGAATCCTAAAGCAAAAGAATACATTCTTGCAGAACTAAATAAGACCGCCAAAGCAAAGAAGTTGAAGGGCTTCGAGTTCATTAAAGCTGTTCACTTGGATCCTATACCGTTTGATATGGAACGCGATCTTCTCACACCAACATTTAAGAAAAAGAGATCACAGCTGCTCAAGCATTATCAGAGCGCCGTTGTTGAACTGTACAAAAGCAACAAGTGAACTGATCCTTACAAATGCCTTTATTGCCCCAACAAAATAAAGATTGCTGCTCATCTCTCTGCCATATATATATATATATATATAT

Network for GWHGAAEX001221

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.27	AMP-binding	69	536	6.30E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.100
SRP064423	SRR2545915	Juvenile tuber	71.000
SRP108465	SRR5643513	five period of Gastrodia elata	37.390
	SRR5643514	five period of Gastrodia elata	40.540
	SRR5643515	five period of Gastrodia elata	35.410
	SRR5643524	five period of Gastrodia elata	39.550
	SRR5643525	five period of Gastrodia elata	52.720
	SRR5643528	five period of Gastrodia elata	60.110
	SRR5643658	five period of Gastrodia elata	72.810
	SRR5643659	five period of Gastrodia elata	25.250
	SRR5643660	five period of Gastrodia elata	29.160
	SRR5643661	five period of Gastrodia elata	24.360
	SRR5643662	five period of Gastrodia elata	25.760
	SRR5643663	five period of Gastrodia elata	24.700
	SRR5643664	five period of Gastrodia elata	26.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	58.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	49.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.240
SRP279888	Gastro	Gastrodia elata tuber	39.21
	Juven	Juvenile tuber	31.33
	Mother_Gastro	Mother tuber of Gastrodia elata	94.69
	Mother_Juven	Mother tuber of Juvenile	74.06