Detail information of GWHGAAEX001222/evm.TU.scaffold_107.57


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392402696|ref|YP_006439308.1|1.00E-24putative transcriptional regulator, Crp/Fnr family [Turneriella parva DSM 21527]
KOGKOG04980K+-channel ERG and related proteins, contain PAS/PAC sensor domain
nrgi|695036500|ref|XP_009405709.1|0PREDICTED: cyclic nucleotide-gated ion channel 1-like [Musa acuminata subsp. malaccensis]
Swissprottr|O65717|CNGC1_ARATH0Cyclic nucleotide-gated ion channel 1
trEMBLtr|M0T997|M0T997_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P22490_001}
TAIRAT5G531300cyclic nucleotide gated channel 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010627229442742484-
Transcript Sequence

Network for GWHGAAEX001222

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00520.30Ion_trans473649.10E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05391CNGC Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0006811Biological Procession transport
GO:0055085Biological Processtransmembrane transport
GO:0005216Molecular Functionion channel activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.170
SRR2545915Juvenile tuber14.700
SRP108465SRR5643513five period of Gastrodia elata22.330
SRR5643514five period of Gastrodia elata27.340
SRR5643515five period of Gastrodia elata25.340
SRR5643524five period of Gastrodia elata26.650
SRR5643525five period of Gastrodia elata36.080
SRR5643528five period of Gastrodia elata24.880
SRR5643658five period of Gastrodia elata36.280
SRR5643659five period of Gastrodia elata14.650
SRR5643660five period of Gastrodia elata14.690
SRR5643661five period of Gastrodia elata16.340
SRR5643662five period of Gastrodia elata13.570
SRR5643663five period of Gastrodia elata15.080
SRR5643664five period of Gastrodia elata14.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.080
SRR6049655Rhizomagastrodiae_C368-T10_good_130.550
SRR6049656Rhizomagastrodiae_C368-T07_good_126.270
SRR6049657Rhizomagastrodiae_C368-T07_good_120.070
SRR6049658Rhizomagastrodiae_C368-T04_good_126.580
SRR6049659Rhizomagastrodiae_C368-T04_good_126.610
SRR6049660Rhizomagastrodiae_C368-T01_good_125.060
SRR6049661Rhizomagastrodiae_C368-T04_good_125.600
SRR6049662Rhizomagastrodiae_C368-T01_good_128.400
SRR6049663Rhizomagastrodiae_C368-T01_good_128.870
SRR6049664Rhizomagastrodiae_C368-T10_good_136.910
SRR6049665Rhizomagastrodiae_C368-T10_good_136.910
SRP279888GastroGastrodia elata tuber 16.55
JuvenJuvenile tuber17.45
Mother_GastroMother tuber of Gastrodia elata 29.70
Mother_JuvenMother tuber of Juvenile 22.80