Gene detail

Detail information of GWHGAAEX001229/evm.TU.scaffold_107.73

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434386406\|ref\|YP_007097017.1\|	1.00E-22	WD40 repeat-containing protein [Chamaesiphon minutus PCC 6605]
nr	gi\|672157832\|ref\|XP_008798638.1\|	0	PREDICTED: protein SPA1-RELATED 3-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9SYX2\|SPA1_ARATH	0	Protein SUPPRESSOR OF PHYA-105 1
trEMBL	tr\|M0S3T8\|M0S3T8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P28310_001}
TAIR	AT2G46340	0	SPA (suppressor of phyA-105) protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000106	3524006	3567349	+

Transcript Sequence
>GWHTAAEX001229 ATGGAAGGGACTGCCGAAGTTAATGAATCTATGGAAAACTCATCTGATACTCTGCACCTTAAAATGAAAGAAAATAATGAATTGCACTCACAAACGGATTGCATTGTGTTGCAAAACCCAGCTTCTGTTATCTCAAAAGACACTGGTTGGACTGAGCATTTTTCATCAATGAGATCAACTGAAATGTTGCTAGAGACTTTAGCTGGTAAAGATCCACATCATGATTTGGTTTCACATTCTGTTTCAGAACCTTCTACTGCCTCTTGTCCTTCCAGCTTTACCGGTGCAATTGTGGAAGAGTTAACATTGAGGGATGCTAATTTTCCAAACCTGGGTAGTAGTGGTTATCCTGGGAGCATGGAAGCTTCTCCTGTAAGGAAAGGACTGTGGCACAATTTAACAGGAATAGCCTGTGGATCTAGAAAAGATTTGGTTCTCAAGGAGTTTTCGAGAGCAGAGGATAGAGGAAAAGTTGCTGGATCTTTTCTGTCTCAGTCTCTAGCAAAAAGGAATCTTCAATACACGCAGTTAGGCTCAAATGATTTGAAGGCCTCTCATGATGTGGTAGAAGGTGATGGCAGGAAAGTTCTTTCAAGGAATATTTTTGCGCACCACCCTCTTATAAATAGGAACAAAGTCATACCTTCATCAGGTTTTCAACAATTTCTATTGAAAAGAACCTTGAATGGTAAAAGCATTGCATATGGCCCCCAACAAGCAGATAATGATACTGGGCTTGTTTCTCAAAGCCAAGTTAATATGGGGATAGATGAGTGCAACACAAAAACCTCTGTATCAATGCATAACTCAATTGTAAATCAAAATGAAAGGGTCCTACTTGATGGTGGTGGGTTTTGTACTGGTTCAAATGTCAAACACATTGGAATTTGCTTGAGGAATTGGCTTAAGCAGAAACATCACAGATCTTACAAATTTGAAAGGCTACAGATGTTCAAACAGATCTTGGAACTTGTTGATACTTCACACTCTCAAGGAAATGCTTTACAGAATTTAAAGCCATCATTTTTTGTGGTGACTTCATCAGGTATTGTTAAATATGTTGGCTCAGTAAGCACTCAAGTGCCGACGGGGAATTTAATGTATTCATCAAGTCATCAAAGTTTTGATTTGAAACCACAGCTTAAACGGAAAAGATTCATGAACTATGATACAAAGTTTCAGGACACTTTATCACATGAACCGATTCGTTCAGGTTGTGGTCAGAATCTGCACGAAAGTTTTTCATCAAAGCATCAACGACCAGGTGAAAAGAATAAAACTGTTATTCAGCATCACAAATATCAGTTAAGTCCAATTGAAGAAGTTTGTGATGATGATAGCAGAACAATAAGCTTTGATAGAGGATACAGTGAACAGATTCAATTGGTTGATTCACACCAGAGTTCTAAATTACCTGAACATCAAAGTATGTTTAATGCTTGTTTCCAAGAACCTGTATCTGAAATCTCAAGTCTGGAAGACAGATGGTATGCTGGCCCTGAGAATCTGTATGGAAATGCTTGCATGTTATCTTCAAATATCTACAGCCTGGGCATTTTATTTTTTGAGCTATTCTGCTCATTTGAGTCAAAAGAGTCACTGTTTTTAGCAATGTCTAATCTTCAACACAGGATTCTTCCTCCAAGCTTTTTATCAGAATTTCCCAAGGAAGCTGGCTTTTGTCTTTGGCTGCTTCATCCTGATCCTTCTTCCAGGCCAAAGTCAAGGGAAATCTTGTCAAATAGTTTAGTATTTGAATGCTGCAACGTTTCTTCTATAGATCAATCATTAGCATCTATTGATGATACAGATGCAGAAACAGACCTTTTATTACATTTTCTTTCATCTTTGAAGAATCAAAAAGAAAATCAGGCTGCCAAGTTGGCAGCAGATATTCAATGCTTAAAAAAAGATGTCGTGGAGGTTGAGAGAATACATTTATCAAGAGCTGAGTCTCTTTATAATTCCAGAGATGTACTGGCCAGCTCTAATGATAACTCAGTTACGCATCTCCATGAAGTGATAGTTCAGACTAGAACAATGTCTTCATGGTCTGTATCAAGTGTAAATGAAGAAAGAATGATGAAGAATATTGATCAGCTCAAACATGCTTACTTCTCTATGAGACCCGCTGTCAAATTTTCTGAAACTAATGTTGCAACTCGGTCTGATGTAGGCATTCTTAAGATTCGTGATAATTTCAATCAGCTCCAGTGTGAGGCTGGTAGAAAGGAGGAATCAACAGAATGTCTTGGTGCTTTTTTTGAAGGTTTGTGCAAGTATGCCCGATACAACAAGTTTAAAGTTCGTGGTTGTATAAGAAATGTGGATATTCATAATTCTGCAAATGTCATCTGCTCGTTGAGCTTTGACCGTGATGAAGACTACTTTGCTACTGCCGGGGTTTCAAAGAAGATTAAGGTCTTTGAATTTGGGGCACTTCTGAGTGATAGTGTCGATGTTCACTATCCATTGATTGAAATGTCTAGCAGATCAAAGCTTAGCTGTGTGTGTTGGAATAATTACATCAAGAACTACTTAGCATCAACCAATTATGATGGTGTTGTACAGTTATGGGATGTAAGCATAGGTCAAGCGTTTGCACAATATGCAGAGCATGAAAAAAGAGCTTGGTCTGTTGATTTCTCTCCTGTGGATCCAACAAAGTTGGCTAGTGGAAGTGATGATTGTTCTGTGAAGCTTTGGAGTATTAAAGAGAGAAATTGCATTGATACAATCAGGAATGTGGCTAATGTGTGCTGTGTCCAATTTTCACCTCATTCATCTCATTTATTGGCCTTTGGATCTGCTGATTACAAGATATACTGTTATGATCTGAGGAATAACAGAATTCCCTGGTGTTGTTTGCCTGGACATGGAAAGGCTGTGAGCTATGTAAAATTTGTAGACTCAGAAACCATTGTGTCTGCTTCAACGGATAACACCCTTAAGTTATGGGATCTTAACAAATCCAGCACATGCGGAATGTCCACTAATGCTTGCAGCCTTACTTTTACTGGTCATACTAACGAGAAGAATTTTGTTGGCTTAACCGTCTTTGATGGATACATAGCATGCGGTTCAGAGACTAATGAAGTTTATGTTTACCATAAATCCCTTCCCATGCCTATTACGGCTCACAAATTTGGTTCCATCGATCCCATATCTGGACAAGAAACGGGTGATGAGAACGGACAGTTTGTATCGAGTGTCTGCTGGAGGACCAAATCAAGCATGGTGGTTGCTGCGAATTCCAGTGGCAGCTTAAAGCTGTTGCAGCTAGTTTAA

Network for GWHGAAEX001229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	772	809	0.16
PF00400.31	WD40	870	903	0.0065
PF00400.31	WD40	956	987	0.05

Protein Sequence

>GWHPAAEX001229
MEGTAEVNESMENSSDTLHLKMKENNELHSQTDCIVLQNPASVISKDTGWTEHFSSMRSTEMLLETLAGKDPHHDLVSHSVSEPSTASCPSSFTGAIVEELTLRDANFPNLGSSGYPGSMEASPVRKGLWHNLTGIACGSRKDLVLKEFSRAEDRGKVAGSFLSQSLAKRNLQYTQLGSNDLKASHDVVEGDGRKVLSRNIFAHHPLINRNKVIPSSGFQQFLLKRTLNGKSIAYGPQQADNDTGLVSQSQVNMGIDECNTKTSVSMHNSIVNQNERVLLDGGGFCTGSNVKHIGICLRNWLKQKHHRSYKFERLQMFKQILELVDTSHSQGNALQNLKPSFFVVTSSGIVKYVGSVSTQVPTGNLMYSSSHQSFDLKPQLKRKRFMNYDTKFQDTLSHEPIRSGCGQNLHESFSSKHQRPGEKNKTVIQHHKYQLSPIEEVCDDDSRTISFDRGYSEQIQLVDSHQSSKLPEHQSMFNACFQEPVSEISSLEDRWYAGPENLYGNACMLSSNIYSLGILFFELFCSFESKESLFLAMSNLQHRILPPSFLSEFPKEAGFCLWLLHPDPSSRPKSREILSNSLVFECCNVSSIDQSLASIDDTDAETDLLLHFLSSLKNQKENQAAKLAADIQCLKKDVVEVERIHLSRAESLYNSRDVLASSNDNSVTHLHEVIVQTRTMSSWSVSSVNEERMMKNIDQLKHAYFSMRPAVKFSETNVATRSDVGILKIRDNFNQLQCEAGRKEESTECLGAFFEGLCKYARYNKFKVRGCIRNVDIHNSANVICSLSFDRDEDYFATAGVSKKIKVFEFGALLSDSVDVHYPLIEMSSRSKLSCVCWNNYIKNYLASTNYDGVVQLWDVSIGQAFAQYAEHEKRAWSVDFSPVDPTKLASGSDDCSVKLWSIKERNCIDTIRNVANVCCVQFSPHSSHLLAFGSADYKIYCYDLRNNRIPWCCLPGHGKAVSYVKFVDSETIVSASTDNTLKLWDLNKSSTCGMSTNACSLTFTGHTNEKNFVGLTVFDGYIACGSETNEVYVYHKSLPMPITAHKFGSIDPISGQETGDENGQFVSSVCWRTKSSMVVAANSSGSLKLLQLV

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K16240	SPA1	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.560
SRP064423	SRR2545915	Juvenile tuber	38.670
SRP108465	SRR5643513	five period of Gastrodia elata	9.640
	SRR5643514	five period of Gastrodia elata	10.140
	SRR5643515	five period of Gastrodia elata	8.580
	SRR5643524	five period of Gastrodia elata	8.610
	SRR5643525	five period of Gastrodia elata	10.710
	SRR5643528	five period of Gastrodia elata	7.570
	SRR5643658	five period of Gastrodia elata	10.860
	SRR5643659	five period of Gastrodia elata	12.550
	SRR5643660	five period of Gastrodia elata	13.870
	SRR5643661	five period of Gastrodia elata	10.770
	SRR5643662	five period of Gastrodia elata	14.370
	SRR5643663	five period of Gastrodia elata	17.570
	SRR5643664	five period of Gastrodia elata	19.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.100
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.100
SRP279888	Gastro	Gastrodia elata tuber	18.99
	Juven	Juvenile tuber	18.74
	Mother_Gastro	Mother tuber of Gastrodia elata	7.06
	Mother_Juven	Mother tuber of Juvenile	9.24