Detail information of GWHGAAEX001231/evm.TU.scaffold_107.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557694902|ref|YP_008797956.1| | 1.00E-24 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| KOG | KOG0417 | 3.00E-105 | Ubiquitin-protein ligase |
| nr | gi|255583802|ref|XP_002532653.1| | 7.97E-106 | ubiquitin-conjugating enzyme E2, putative [Ricinus communis] |
| Swissprot | tr|Q94F47|UBC28_ARATH | 4.00E-106 | Ubiquitin-conjugating enzyme E2 28 |
| trEMBL | tr|M0SMQ5|M0SMQ5_MUSAM | 2.00E-106 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P10380_001} |
| TAIR | AT5G41700 | 3.00E-105 | ubiquitin conjugating enzyme 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000106 | 3572812 | 3579688 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001231
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00179.25 | UQ_con | 5 | 141 | 4.70E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06689 | UBE2D, UBC4, UBC5 | Protein processing in endoplasmic reticulum | map04141 |
| Ubiquitin mediated proteolysis | map04120 | ||
| MAPK signaling pathway - fly | map04013 | ||
| Toll and Imd signaling pathway | map04624 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 97.210 |
| SRR2545915 | Juvenile tuber | 104.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 212.030 |
| SRR5643514 | five period of Gastrodia elata | 286.220 | |
| SRR5643515 | five period of Gastrodia elata | 219.980 | |
| SRR5643524 | five period of Gastrodia elata | 301.150 | |
| SRR5643525 | five period of Gastrodia elata | 166.550 | |
| SRR5643528 | five period of Gastrodia elata | 190.810 | |
| SRR5643658 | five period of Gastrodia elata | 166.060 | |
| SRR5643659 | five period of Gastrodia elata | 176.790 | |
| SRR5643660 | five period of Gastrodia elata | 156.020 | |
| SRR5643661 | five period of Gastrodia elata | 185.090 | |
| SRR5643662 | five period of Gastrodia elata | 160.390 | |
| SRR5643663 | five period of Gastrodia elata | 153.700 | |
| SRR5643664 | five period of Gastrodia elata | 132.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 198.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 376.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 226.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 144.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 192.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 186.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 187.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 205.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 272.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 265.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 288.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 288.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 157.70 |
| Juven | Juvenile tuber | 156.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 272.15 | |
| Mother_Juven | Mother tuber of Juvenile | 203.53 |