Detail information of GWHGAAEX001235/evm.TU.scaffold_108.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297621467|ref|YP_003709604.1| | 3.00E-110 | malate dehydrogenase [Waddlia chondrophila WSU 86-1044] |
| KOG | KOG1496 | 0 | Malate dehydrogenase |
| nr | gi|672127935|ref|XP_008787447.1| | 0 | PREDICTED: malate dehydrogenase [NADP], chloroplastic isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|O48902|MDHP_MEDSA | 0 | Malate dehydrogenase [NADP], chloroplastic (Precursor) |
| trEMBL | tr|M0U771|M0U771_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP07600_001} |
| TAIR | AT5G58330 | 0 | lactate/malate dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 88254 | 97504 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001235
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00056.22 | Ldh_1_N | 102 | 249 | 2.20E-33 |
| PF02866.17 | Ldh_1_C | 252 | 385 | 4.20E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0006108 | Biological Process | malate metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0046554 | Molecular Function | malate dehydrogenase (NADP+) activity |
| GO:0016616 | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0016615 | Molecular Function | malate dehydrogenase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.370 |
| SRR2545915 | Juvenile tuber | 24.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.200 |
| SRR5643514 | five period of Gastrodia elata | 28.040 | |
| SRR5643515 | five period of Gastrodia elata | 23.710 | |
| SRR5643524 | five period of Gastrodia elata | 23.980 | |
| SRR5643525 | five period of Gastrodia elata | 26.870 | |
| SRR5643528 | five period of Gastrodia elata | 23.480 | |
| SRR5643658 | five period of Gastrodia elata | 28.600 | |
| SRR5643659 | five period of Gastrodia elata | 26.750 | |
| SRR5643660 | five period of Gastrodia elata | 25.660 | |
| SRR5643661 | five period of Gastrodia elata | 24.200 | |
| SRR5643662 | five period of Gastrodia elata | 22.930 | |
| SRR5643663 | five period of Gastrodia elata | 32.590 | |
| SRR5643664 | five period of Gastrodia elata | 24.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.22 |
| Juven | Juvenile tuber | 22.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.29 | |
| Mother_Juven | Mother tuber of Juvenile | 26.79 |