Detail information of GWHGAAEX001236/evm.TU.scaffold_108.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392411628|ref|YP_006448235.1|2.00E-11hypothetical protein Desti_3313 [Desulfomonile tiedjei DSM 6799]
KOGKOG03799.00E-152Kelch repeat-containing proteins
nrgi|743835444|ref|XP_010935816.1|0PREDICTED: acyl-CoA-binding domain-containing protein 4 [Elaeis guineensis]
Swissprottr|Q9MA55|ACBP4_ARATH2.00E-139Acyl-CoA-binding domain-containing protein 4
trEMBLtr|M0U2W7|M0U2W7_MUSAM7.00E-180Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P23600_001}
TAIRAT5G044209.00E-152Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000117106849175395-
Transcript Sequence

Network for GWHGAAEX001236

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07646.14Kelch_2581003.00E-08
PF13418.5Kelch_41612102.20E-07
PF13418.5Kelch_42112523.20E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.130
SRR2545915Juvenile tuber22.720
SRP108465SRR5643513five period of Gastrodia elata13.080
SRR5643514five period of Gastrodia elata13.750
SRR5643515five period of Gastrodia elata13.730
SRR5643524five period of Gastrodia elata12.380
SRR5643525five period of Gastrodia elata14.150
SRR5643528five period of Gastrodia elata12.540
SRR5643658five period of Gastrodia elata15.080
SRR5643659five period of Gastrodia elata15.800
SRR5643660five period of Gastrodia elata15.080
SRR5643661five period of Gastrodia elata14.300
SRR5643662five period of Gastrodia elata12.730
SRR5643663five period of Gastrodia elata11.500
SRR5643664five period of Gastrodia elata11.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.130
SRR6049655Rhizomagastrodiae_C368-T10_good_112.370
SRR6049656Rhizomagastrodiae_C368-T07_good_111.920
SRR6049657Rhizomagastrodiae_C368-T07_good_114.670
SRR6049658Rhizomagastrodiae_C368-T04_good_115.290
SRR6049659Rhizomagastrodiae_C368-T04_good_115.630
SRR6049660Rhizomagastrodiae_C368-T01_good_112.630
SRR6049661Rhizomagastrodiae_C368-T04_good_111.420
SRR6049662Rhizomagastrodiae_C368-T01_good_112.770
SRR6049663Rhizomagastrodiae_C368-T01_good_111.330
SRR6049664Rhizomagastrodiae_C368-T10_good_113.700
SRR6049665Rhizomagastrodiae_C368-T10_good_113.700
SRP279888GastroGastrodia elata tuber 14.04
JuvenJuvenile tuber15.67
Mother_GastroMother tuber of Gastrodia elata 19.83
Mother_JuvenMother tuber of Juvenile 15.36