Detail information of GWHGAAEX001241/evm.TU.scaffold_108.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19471.00E-123Leucine rich repeat proteins, some proteins contain F-box
nrgi|743827729|ref|XP_010933667.1|2.45E-174PREDICTED: F-box protein At5g51380-like [Elaeis guineensis]
Swissprottr|Q8VYT5|FB254_ARATH3.00E-133F-box protein At5g07670
trEMBLtr|M0RW64|M0RW64_MUSAM1.00E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P01560_001}
TAIRAT5G513801.00E-123RNI-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000117350104376296+
Transcript Sequence

Network for GWHGAAEX001241

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.6F-box-like841191.40E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.830
SRR2545915Juvenile tuber10.350
SRP108465SRR5643513five period of Gastrodia elata16.540
SRR5643514five period of Gastrodia elata17.400
SRR5643515five period of Gastrodia elata16.410
SRR5643524five period of Gastrodia elata15.570
SRR5643525five period of Gastrodia elata8.290
SRR5643528five period of Gastrodia elata6.570
SRR5643658five period of Gastrodia elata6.360
SRR5643659five period of Gastrodia elata8.960
SRR5643660five period of Gastrodia elata9.160
SRR5643661five period of Gastrodia elata8.890
SRR5643662five period of Gastrodia elata6.500
SRR5643663five period of Gastrodia elata5.870
SRR5643664five period of Gastrodia elata5.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.870
SRR6049655Rhizomagastrodiae_C368-T10_good_119.210
SRR6049656Rhizomagastrodiae_C368-T07_good_112.980
SRR6049657Rhizomagastrodiae_C368-T07_good_114.570
SRR6049658Rhizomagastrodiae_C368-T04_good_111.750
SRR6049659Rhizomagastrodiae_C368-T04_good_113.750
SRR6049660Rhizomagastrodiae_C368-T01_good_113.020
SRR6049661Rhizomagastrodiae_C368-T04_good_113.720
SRR6049662Rhizomagastrodiae_C368-T01_good_112.230
SRR6049663Rhizomagastrodiae_C368-T01_good_111.880
SRR6049664Rhizomagastrodiae_C368-T10_good_113.990
SRR6049665Rhizomagastrodiae_C368-T10_good_113.990
SRP279888GastroGastrodia elata tuber 6.84
JuvenJuvenile tuber16.14
Mother_GastroMother tuber of Gastrodia elata 20.04
Mother_JuvenMother tuber of Juvenile 14.78